RNA id: TU129673


Basic Information

Item Value
RNA id TU129673
length 3465
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G103761
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7624453 ~ 7627917 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAAAATATTAGATAACTTTattagatttacatttaatacataattaggTTTATATACAGTCCTTAATAGAAAGTGTGTAATCTCGTTTGTGCATAATAGTACACTCATGCTAGCCCTCTTAGTaaagcagttgatattataCATTACGTACATGAATATAAACAAGGTAGTTTACATAAAGcattcctgttttcttttttcttcttaccCATGCTTCTTTGTAAATAGATTTGCCATGTTACAAAGTTAACATGTAAATATGCTTGCTTGTTATTGattattcactttttctttACTATTTTAAGTCTGGCCAAAACTGAAAACGTCCACTAATGAGTCAGAGAGAAGACAGACTGTTGAGTGTTTCAGGATTCAGTTAAGAGAAGGAGAAACACTTCAGCCCGTCTCGTCTCAAATACAAATTCCTGCTTTGATCCAAAgcgaaaataaaacactttcttgcAAAACCTCTTTAGAATGCAACTGTATGCATACATAtggtacatttaatttaaaataataaattccaTCAGGATTTTTATAAGGCATCCTCAACAAGTAAACCCTTTAATTTAGGGGTTGCCAATAGCactttataaatgcataataaaccAGCTATTAACACTTCATTATCCATTTACAAAGCATTTATACACTATGAAAACAATCTGCCACTTATAATAGCGTGCAATCTGTCACTTAATCGCAGGTTAACAACACTCTGGTAATATTCAGGTTATGAAGACTTTATAAATGGGATCTGCAACCCCTAATCTAATGTGGTatcaatttgtgtgtgtgtatgtgtaactttagcatttgttttcctATGCATACTAACAGATTGAAATGTTGGCACTATCAGACATCATGGAATTAATCTGTACAGTCTTTACTTTCATGAACATGCTGCAAATATTCTACTGTTCGTACAAATATCTTATGGATATAAAGCTGGACACacctttaatatatttgaatgttctTTGTACTCGGCATGTGATGACAATTTGCACTAGGTGATTTGATGCACCATTTaagattataaaataatttggtatCAATTATGTTTCATCAATATGACTTTTTCAACAGTCTCTGAAATATTCTTAAAGCGTTGTTAAAATACTGACAACACTTGAATTTTATTACTAGTTTTGCAACTGGTTAAAATCATGAGCTCTTAAAAGTCATGAGCTGAAGCTGAGGAGATGCATTGTTAGTATGGAGAGTCTTTCTAAGTTTACTTAACAGGCAAACTAAGACTGATATTGCAGTTATAATTCTGGTCATATATACACTGGCACCAGAAagcacttgtgtgtgtatgcgtttGCTTTTCCAGTTATGGTTTTTCCATTTAAGCTAAGGGGTAgaaaaattaaagtttttttttattgtttttaatgacttaTGAAAGACAGGAAAGGGCTATGAAGCCAGAAcctaatgaatttatttattttaaatgtgcacataagctaatattattatttggtgtTCCGAGTAAATATTTTAGCCCAGTCTGTATGGAACATCTAAAGAGAAATAAcctatatttcattttaagaattactattattattatttttaaaaagccatggttgttttttttaatctattgttGGTTGTTGTGAGTAAAGTAAAGTACTCAAGTTCTACGTTTCACCATTTATCAGCAGTGTTTTGAAGTCACTGGCCAACAGCAGCTGCTCACTGTCCAATTACTGCGACTGCTGTCCTAAGAAATGACAGCGCAGGGggtgtttgaatgtgtttaataaCCATCAACCTATGAAAATACCatgttgttttacattacaGTGGAGTGGTTACTCTTCTAATCTTTATATTATCATCATATTATGTTTAGATTAAGAGATTAATCTctctaaatttaaataatggtCACTGGCAGCTTTTTTCTTGCTTATTAgatgagtttttgttttgttttcagatggTAAAAGACGGCTACAAATGTAGTTGATGGACAAGTTTGCCAATCCTCGAGGCCTGGCTTTGAGGTTTAAAAGCAAGAGTAACATTATACTAGACTTTTAGCATGTTTAATAGAGATTAAGTGTAATATTGACTCTGAGGGCTACAGGTATGGGAGtggctgcattttaaatagaGCTGTGTCCAGGGCTGtgaacaaaaatgtgtaatgcGGCATAACAGCACTTAACCCAATGGCGGGTGGGGACATTAGTATTAATCAAAACTGGGTTAATTTgagttgttttccatttcctaTCAGCTCCAGTTGGGCTCTCCTTGAAAATCCCtttctttgttattaatgttgttttgaacGGCAAAGAAAGAATGCATGGTCTGAAATATTTACTGCAGCGTTTGTGCACCACCCCCCTCCCTTGCTTATATAAGCTGCTGCCCTACTGTAGAATATTAATATCACCTATTTTTCATGTCACTGTGTGCCATCCTCCATGCAGCCAAGGTTAATTATCAGCCATTAAAAGAGGAATAAACCTTCTCCATTGGCAAGAAAAAAAGCCCCCCAAACTCCTGTGATGAGCAAGAGGCTTATCATTGGAGCAATGGAGCAGATCGGCTTGGAACAAGACCTGCAGTGACCCTGATACCAACTGCAAACGGCAACTATATTAAGCCACCATCTGGAGCTGGGGATGTGGGAATTGTAACGCATGCCTTCTGAATCCTTGATCACACTCCCAGACTGACATCTcttttgagtttttgtttgCGGAATCAGGAGCCCGAAGTTGAGGAGCTAAACGGACAATCGGTGTGCTTCGAAATGCTTTCACAAACGCCTGTTAGATGTTTGGCTgctttgcagtgtttttctttcttttctttaaacaattgtttttgtttcacatgtTCTACCTCTTCTTCATGTGGAGTCATTCCACTGGAGCATAAATTAGGAATGTTGGACGTTTCCAAACAAGGACAGGTGGCTGGTTTGTATTTCATCCCACATTtcccagtgtttgttttttactgggAGCAATCATTAGCAAGGATGCACAGCTCCTGTGATATGTGATTTGCATATGTGGTCTTTTCTACTTTTCCTTCCACCTGAACTCTTTACCCCTgcattgaaattatttatttgttaagcTATTAGAGATGTAAAGGTCCCACTGATTGAAAGGGCACTGCGTACTCATCATCCTTATTAGCCCATCTTTTTCTGCCTCTTTCACTGCAATGTTATCAAAAGACTACAGGATGGAAAACCATCAATGGTGAACATGATATTTGCCAAGGAGAGGGTAGCATTTTACAATCAAACCTATACAGTTTCCCCATATAAATAACCCGAGCTTTGACCAATTTCAGTGAGTCAGAAATTAATTCCTTTTGCAAGATGCTGAAGACTCTATTGTGGCCTGGTCAGAGGGGACTCCTGGCAGCGACAAATTTTGTTAAATGACTTTAACACTTACTGACAGgataaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129582 lncRNA upstream 163300 7456761 ~ 7461153 (+) True G103698
TU129571 lncRNA upstream 172161 7390002 ~ 7452292 (+) True G103688
TU129557 lncRNA upstream 226333 7395628 ~ 7398120 (+) True G103678
TU129564 lncRNA upstream 239726 7373675 ~ 7384727 (+) True G103684
TU129549 lncRNA upstream 314844 7308605 ~ 7309609 (+) True G103670
TU129716 lncRNA downstream 221877 7849794 ~ 7850029 (+) True G103797
TU129719 lncRNA downstream 357167 7985084 ~ 7987913 (+) True G103800
TU129747 lncRNA downstream 404812 8032729 ~ 8034693 (+) True G103823
TU129788 lncRNA downstream 433362 8061279 ~ 8069695 (+) True G103850
TU129817 lncRNA downstream 463049 8090966 ~ 8101018 (+) True G103873
AMCG00011010 mRNA upstream 6188 7611278 ~ 7618265 (+) True AMCG00011010
AMCG00011011 mRNA upstream 20381 7586266 ~ 7604072 (+) True AMCG00011011
AMCG00011007 mRNA upstream 65445 7555076 ~ 7559008 (+) True AMCG00011007
AMCG00011004 mRNA upstream 328577 7291271 ~ 7295876 (+) True AMCG00011004
AMCG00011002 mRNA upstream 338182 7271184 ~ 7286271 (+) True AMCG00011002
AMCG00011014 mRNA downstream 138362 7766279 ~ 7767019 (+) True AMCG00011014
AMCG00011015 mRNA downstream 141101 7769018 ~ 7778092 (+) True AMCG00011015
AMCG00011016 mRNA downstream 339423 7967340 ~ 7973727 (+) True AMCG00011016
AMCG00011019 mRNA downstream 367428 7995345 ~ 8011218 (+) True AMCG00011019
AMCG00011018 mRNA downstream 412904 8040821 ~ 8051286 (+) True AMCG00011018
TU129402 other upstream 703522 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 981825 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 2982095 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 3540867 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 4044176 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 920446 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 1902557 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 3190771 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 4038281 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 4180929 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile