RNA id: TU129712


Basic Information

Item Value
RNA id TU129712
length 2382
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G103794
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7777008 ~ 7779941 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaATATTGTTGAACTAGATCTACTCTTCAATTTCAGAATTTTTTCCcagaatgtgttaaacagcTTTGACCTAAACAAAACTGCTACCAGTTGACTGAAGACTAAAAGGTACCAGCTGACCAGAGACAGGCTGTGTGCACAGGCTTGAGTACCATAGCACGCTATTGACTTctagtaacattaaaaaaattgtacaCCCCCTGATGGTTTCTTGATAATCCTTATTAAACTAAATAGGAGTCCTCACTggaagaataaattaatatgatgTTCAATTATTGTTTTCTGCCAGAAAGACACGATTTATATTAAGATATCGGAGTTCCATaagtataaaatacaaatgaaccagaataataatgttttcttctgtttgtcaGGAATTAATAGCATCTGCAGACCAGTTGCATTTGTCTTCAAGACAAAGGCCATGATCATAAAAGGAGAAACATATATTGCTCAAGTTAATTACATGGAAtaatcagaaacaaataatgcCAACAACACTTTAGTCTGCAACCAAACATTGTTTAagtcaaaagaaaatatacagaataAACCATGCTGCTTATCTGACCATACTAACATGCTATACAAAGCCTTTTATATTACACTTACAGACAGTGGAAAATGAGCAGCCCTTAGAAATTGTAACCATTgacactgatttgtttttttttggtcgctaaaaacaaaacaaaaagattaacAAGAGCTTGTTAGAACTAGATGAGAAATCACATACTCTTAACATTCATCACAAAGTAAGAACAACCCAACTTTGATTTCCTTTCTCGGGTGTTTGCagtttgaagaagaaaataaataaatctgcagatTTTAATATTGCACCACTTGAGAGTAATCAGTCATCAAAAGCAGAGCCAAAAACAATGGAAACTGGCTCTTAGCAGCTCCCGATTGGTTGGTTGTTATAGGAGGAGGAAATTCCCCAGCCATCTGACACCCTGTTTTGTTACTTATCAAAATACCCACCAATTTTAACCCTAAGTAACCCACTGTGATGTACAGATCAGAACCATTTCACAGGcttaacaaaaacagattatCCCAATGGACCAGGCCTCTATATGTGGCACTTGTGTCACACTGGGTTATAAAAAGATGCtcaaaacactgcaaaatgtgttcttttcaTGACAGTCCAGTACTGAGCATCTTCACACAAGATGAGCAGAAAGtactaaaatgtgtgtgtggggaggggagggatTTACCAATTTTTCCCCTTCTGTTTTCCTCCTCTCAGATGTGAAGGATCAGTTCACTGCAGGTCTAGAGTGTGATAAGCAGCTATATTTGTACATCATGAACAATCAGCAATATGAAAATACAGGATGGGCAGAATGGCTGAAATCACTGTGGTTGCTCTGTAGTTAGACAGTTAATCGTGAGGTACATGTCCCTTGCACTGCATAAAGataattttcattaaacacTCTTGATTTCACACAGCCTTCAGATAGGTCATATATTTGAcataatgcaatatttaatgtaCCATAactatgaatgtttttatcactttgttaaagaataaaatacatctgttaATTTACTCGTGCTACTGAAGAGTTAGTAAATCTAGATTTAGAGTACAAAGCAGAATTCTCTATGTATACCAAAAATACCTCTGCTCACATACAGAATCTTTTCTTCAATGAGAAATTAAGCAGcttaatgaagaaaataaatagatgatggtaataataataataataataataataataataataacaaaagaaagCCAGAAAATGTAGAATGCATTTCCTAGGCTAAAATTTCAAATTTTGGATAAAAGTGAggatttatgcatttttaatggcattcaaagaaaaaaacaaaagaagaaatctTGAGATTTCCCACCtagaatattaaataatttatacaaCTGATTTTTCTTCTATCCAGAAGATTACTACACTTAGATATAAGAGCAACCATCTGAAACTACAGAGAAAATTAATTCAAGAGAATTAGTCCCAAATGGTTCCCTATTAgaccaacaaaaaacaaagtaatgacTTTGTCTAGAACatagaacataaaacaaaaaaatgtttttaagactAGCTTTTGCACAGTAGCAATTTAACTTATTGCCTTTCAGGGGATGATATATCCAGCAAACACTTCAAAGCTATAGTCCTCATTCATCTGATATTCTTCTACTTCGATAATGGGGAACACGGTAATGTCATATGAACAGTTATACATTAAGCACGGTTCTTGTTTTAGGAGATTCGACActgtaactttttctttttcctattCATTCCCAATCCTCCCAATCACCGTCCAccagCTCTCCAGTGGCTTCTACTTTGGAAAGAGCTTGCTGGACCTCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129541 lncRNA downstream 543694 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 587425 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 587425 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 605203 7115984 ~ 7171805 (-) True G103645
TU129387 lncRNA downstream 1014869 6755293 ~ 6762139 (-) True G103556
TU129760 lncRNA upstream 158196 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 191010 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 276540 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 387754 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 561422 8341363 ~ 8341588 (-) True G103900
AMCG00011013 mRNA downstream 34442 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011012 mRNA downstream 129996 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011008 mRNA downstream 225393 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011009 mRNA downstream 269842 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011005 mRNA downstream 368312 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011022 mRNA upstream 205340 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011023 mRNA upstream 217597 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011021 mRNA upstream 251236 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011029 mRNA upstream 281502 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011028 mRNA upstream 290905 8070846 ~ 8077484 (-) True AMCG00011028
TU129184 other downstream 2028444 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2636552 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3126902 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3591034 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4357832 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 191683 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1039610 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1074964 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1454470 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1821943 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile