RNA id: TU129719


Basic Information

Item Value
RNA id TU129719
length 1991
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G103800
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7985084 ~ 7987913 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAAGAAACTACATCCTTTAATAGTTAAACcacatactttatttaaaatacagaacaaaacattgttgGGTAGAAATGCAATATTCTTTATCTTTTCTTAATACAAACTTttcaaaaaagtgaaataagcatttcaagaagaacaaggagaaaataaaaaaataaccaaaaagaaacaaacatgtctGTCAGACACCCGTGGGATGAGACAGTCTGGAAGAAAGTAGCACAGAGGAGCACATAATACAGCAGAACCTCAATGAAGAATGTGGATATTTGCCATTGACAATACAGTCACTGGTGGACAAGGTTATTGTTCCAAAATAAAACCCCACGACCCCCCAAAAGACATATATAAAGCAGGTACAGAAATCTAGAATTAACTAATGACGAAGATTAaaacactttttccacatttcagatattccatttcaataaatgtgggtggggggtgggtaaAAATCAAAACTGCTTCTTTAATCAAAAGTCCCCTGAAGAATAGACATAAGGTGTCTCACTACTTCTGAAGCACAACTTCCAAGGACCTGTGTATCATATCAGCACCATTTCAATATGTGCAGTACTgtactgatttttatttatattcaacCTCAAGCATTGGAAAGAGCTGGATGACACTCCAGCCGATGTTAATACATCATTTAGTATGGTTTGTTCAAAATCAAACGGGCAGATTTAAAGCACGGACAATAGGAAGGTTTATTAAGGCCCCCTCTCCCAATTTAAAAACCTGGTTTGGAAAAACACTGGATATTATTTCTTCCAGACAAAAGTAAAGCAACTGAAGAAAATCaattggcagtttttttttttttttttttttttttttttgggggggtaaaTCTAAAGCGTATTTTCTTAATACAAGCCTCTGAAAGGTCTTAAAAACACCACACAGCAGATGTAGAGAATTTCCATAACACATTAAACTAAAAAGTGGCACAAAGAAAAAGAGACTACAACTCCCTTCACGTTCTTCAGAAACACtcatgatttaaataacttACTGAAGCTAAACAAAGTTCTAaacatggaggaaaaaaaaaaaaaagttatctaCTGCTTTTATAAAAAGTTCCTTTCACCCTGGTCCTCACCATTTCAGCTGGTTTAGTTTAAAGGGAGACTTCAGGACAGAACTGCTGCCTTGTTATATTGGCATTTGGTTGAATCAGAAACGCATTACTCCAAAAAAACATCCTTgtaattcaaaaggaaaaaaacaaaaatggtcaaATGTAACCCAACCTTTTTAGTCCTGTTagaacacaaatattaaaatgtgtttagaaaataatttacagaGTCCATTCAGGATTTTGCTTTTCAGTGTGGATTTCTAAAGGGGTCTGGTTCTACTGTAGTCATGCAACGCTGAAAAGACCGGGGGCTGGCAGCTCTCCTCACGCGGTTTTCAGTTCTTCCTTCGCcCCctttgtttccattttctccTCTGCAGATTTTTCCTCCTCTTTTACATCCTTTTTCTCCTCTCCGTCTTTCTCCTCCTCAGTTTTCACTCGCTTTGCCTTCTTGTAATTGGCTGCGTTCCTCCTGCCGCCCCCCTGTCCCTCGTCCTCAGAGTCGGAGAACTCCTCATCACAGGCTATCCTCTTGTCATGCGCCCGGACTGCAAGAGGAGACACCCAGCCACAGGTACAGAGGTAAGGAACACCATTCATTTCCCTGAAGCCCTTATAAAAGGGTGACTCACATTCAGAAACAATTGCAGTATTGACTCACAGGAAAGCATATCATGTGTACACTTCTCTCTAGAGAATGACAGTTAAGCAGTGAAGTAAAACAACTGATCTTGGATTTAGAGCACTTGTGTCCATTAAAGCAGCCCCTAAACCCAGGATCTCAAAGCAGACATTTATTAACTTACACACAAGCATAAAGTGTTAGAAGAGTATAGTGTTCTTTAAGGAACAGATAGGTCAATTGCACTGTATTCTTTGACAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129716 lncRNA upstream 135055 7849794 ~ 7850029 (+) True G103797
TU129673 lncRNA upstream 357167 7624453 ~ 7627917 (+) True G103761
TU129582 lncRNA upstream 523931 7456761 ~ 7461153 (+) True G103698
TU129571 lncRNA upstream 532792 7390002 ~ 7452292 (+) True G103688
TU129557 lncRNA upstream 586964 7395628 ~ 7398120 (+) True G103678
TU129747 lncRNA downstream 44816 8032729 ~ 8034693 (+) True G103823
TU129788 lncRNA downstream 73366 8061279 ~ 8069695 (+) True G103850
TU129817 lncRNA downstream 103053 8090966 ~ 8101018 (+) True G103873
TU129810 lncRNA downstream 114482 8102395 ~ 8109235 (+) True G103868
TU129921 lncRNA downstream 596217 8584130 ~ 8590598 (+) True G103959
AMCG00011016 mRNA upstream 11357 7967340 ~ 7973727 (+) True AMCG00011016
AMCG00011015 mRNA upstream 206992 7769018 ~ 7778092 (+) True AMCG00011015
AMCG00011014 mRNA upstream 218065 7766279 ~ 7767019 (+) True AMCG00011014
AMCG00011010 mRNA upstream 366819 7611278 ~ 7618265 (+) True AMCG00011010
AMCG00011011 mRNA upstream 381012 7586266 ~ 7604072 (+) True AMCG00011011
AMCG00011019 mRNA downstream 7432 7995345 ~ 8011218 (+) True AMCG00011019
AMCG00011018 mRNA downstream 52908 8040821 ~ 8051286 (+) True AMCG00011018
AMCG00011020 mRNA downstream 66964 8054877 ~ 8058932 (+) True AMCG00011020
AMCG00011017 mRNA downstream 78924 8066837 ~ 8068364 (+) True AMCG00011017
AMCG00011032 mRNA downstream 439793 8427706 ~ 8433383 (+) True AMCG00011032
TU129402 other upstream 1064153 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 1342456 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 3342726 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 3901498 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 4404807 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 560450 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 1542561 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 2830775 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 3678285 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 3820933 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile