RNA id: TU129762


Basic Information

Item Value
RNA id TU129762
length 2091
RNA type TUCP
GC content 0.44
exon number 2
gene id G103832
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7938137 ~ 8027031 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaagaaaaaaaaaaaaaatacattgtaaacaaacaaaaagactaaaagctttttttctcattaaaaggTTTCTTGGTTTCTCTATACAGCACAAAATACTTGAAATTTGGGTAAAACATAGGAATGTAGAATTCTAAAAGTTGGTAAGATTTGAAAGGATTGTTTCCATATAACAGTCATTGAAAATGGAGAAGTCTCACTTCCACTGCTTTCATCATTATCAAGAACATGGgagatgagaaaaataaaatatataggatTGCCACGCCattaaaaaaaggggggaaaagggGGATGCAgcgatttgtttttttgcaaattatggaaagaaaaatattcaGTTGATATCTTGACCGCTTCCCATGAACTTACAATCCACATCCGTTTCAATACATCCAACTCCCCACATGGAATGAACTGGCACTCTTACGGTGTTTCATCTTTTGTAGAACTGTTCTTATTAAGAAATTTACCAAGGCAGTGAGTCTGTGGTTaaactgatgtgttttttttgttttgtttttaagaacgTGGCACAATaagtctttttatatatatatatatatataatttttgaaaaaaaaaaaacagttcacaAAGTTCTGGAATACAATCACTCCTCCTTCTGTTCGGAAGGTGCGGGTGTGGAGCTGTCCTCCTCCTTCTCCGCTGGTTTAGAGGACTCTGCGCGGGCCTCCTCTGTCTCCGGCTTGGCCTCGGCAGCTACGGGTGTCTGCTCCTCCACTTTAGCTGGAGCCTCTTCGGTTTTGTCTGCAGGCTCTTCGGTGGCTTTGGTTTCTTGTCCCTCGGCGGCCTCAGATGTGGCAACGGCATCCTCCTTTGGCTCATCTGGCGTTGACTCTTCTTTAGCCTCGCTGGCGGCAGCCGTGGCTTCGGCGGGGCCGTTCTCCTCGGCTTTCTCAGTCTGCTCCTCGGATGGAGAGGCGGCATCCTCCTTGGCAGCTTCCCCAGTGCTCTTCTTGCTCTTCTTCATAGAAAGACCCTTAAACTTGAAGGAGTTCTTCAGAGAgaacttcttcttcttcttcttcggtGTCTCCTTAGCCGCCTCCCCCTCAGGCTTGGCAGCTTCACCTTCGGCCGGTGGTGCGGGTTCAATAGCATCTCCAGCCACGGTCTCGGCCTCCTTTGAGGGTTCGGCAGATCCATTTCCGTTAGTCGCAGCAGTTTCACCGTCTGGTTTGGCAGACACGTCTCCGTTGGTCTTGACATGCCCATTCTCCTggaaacacaaagagaaacGTTGAACATAAAAAACTAGGTCTCAGTTGTGCACCCATACGGATGTTATTCGGTTAAGTTGAACAAATACATTCgctttgtttcaaaatattaaaatacacacaattccACATTGCCAAATCAATCGGAGTCCCAGATGGTATGAAATGAAGGCGCTGTTGTCGATTCATACAGGGCACGCCTTGATTCTCCGAAAAACGACGCCTttcaccactagagggcagcgTTACTCCATGTAATAACCGAGCGGCAGCACTGCTCTTACACAAAGCAGTCAGAATGGCTGGGCAGGAAGCCGGCTGGCACACAATACATCTACTTTCCATTCCAATAAATGAGAAGGAAAAATGACCCGCAGAAACTGCAATTGAAAcagtttcatttgatttgacCAATTTTAGAGGTGTGAAGTGTCTGGTACATATTTTCTCTTGAAATATGATCCAACAAAGTACTTTAATAGATATAAttgcattattacatttatttcatacatacatatatatagagagagcgTCAGACGGTCCAAACTGGTTTTGCACAGGGGGTGGGTTAATAACCGCACTGGTATATTATCAGTGTGGATTAATTATCCGAGGCTACCGCGTTAACTTcgagcacagaaataaaaactcGCATGTGCAAAATCCCACCGTTTGCATTCATTTGCAGTCGCCGGGCACCGAAAAtaatccctccctccctctattGATCCTGACCCGAGTTGCGTCTGCGAGTCTTTTGTTCTGGCGCATCGATCTGACCAGCCGCCGACAGCAGAGCAACGACCCAGCAGCCTCATCATCAGGTGCGGGGAACACAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129712 lncRNA downstream 191683 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 738310 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 782041 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 782041 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 799819 7115984 ~ 7171805 (-) True G103645
TU129800 lncRNA upstream 36959 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 148173 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 321841 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 323062 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 441408 8460930 ~ 8462662 (-) True G103929
AMCG00011013 mRNA downstream 229058 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011012 mRNA downstream 324612 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011008 mRNA downstream 420009 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011009 mRNA downstream 464458 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011005 mRNA downstream 562928 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011021 mRNA upstream 11655 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011029 mRNA upstream 41921 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011028 mRNA upstream 51324 8070846 ~ 8077484 (-) True AMCG00011028
AMCG00011026 mRNA upstream 58856 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011024 mRNA upstream 62896 8082418 ~ 8090075 (-) True AMCG00011024
TU129184 other downstream 2223060 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2831168 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3321518 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3785650 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4552448 3416368 ~ 3419176 (-) True G102990
TU129989 other upstream 800029 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 835383 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1214889 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1582362 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1721611 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile