RNA id: TU129849



Basic Information


Item Value
RNA id TU129849
length 235
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G103903
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8342584 ~ 8342818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGGGACATTTGACAACACAATTGCAATAGTGCAAAGGTTACATATCAGAGTGGTTTGCGAACAGCAGGAAAACACTCAAGCAAGAAGAATACAGCAGGCCCAAGagttaaacaaaatgcacacacacacacgcacacacacacacagtatgataGCAAGCAGGTAAGCGACCATTTAATTGCCTCTCTCCTCTGTGGCCTGCTTTAtcagtttattcatttatttactttcacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129846 lncRNA downstream 996 8341363 ~ 8341588 (-) True G103900
TU129839 lncRNA downstream 174660 8167695 ~ 8167924 (-) True G103893
TU129800 lncRNA downstream 285901 8056481 ~ 8056683 (-) True G103859
TU129760 lncRNA downstream 315553 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 367337 7970951 ~ 7975247 (-) True G103832
TU129887 lncRNA upstream 118112 8460930 ~ 8462662 (-) True G103929
TU129971 lncRNA upstream 463652 8806470 ~ 8811022 (-) True G103999
TU129987 lncRNA upstream 503146 8845964 ~ 8849961 (-) False AMCG00011051
TU130051 lncRNA upstream 621899 8964717 ~ 8965281 (-) True G104054
TU130052 lncRNA upstream 622554 8965372 ~ 8965579 (-) True G104055
AMCG00011031 mRNA downstream 13642 8328395 ~ 8328942 (-) True AMCG00011031
AMCG00011030 mRNA downstream 193423 8133029 ~ 8149161 (-) True AMCG00011030
AMCG00011027 mRNA downstream 222092 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011025 mRNA downstream 242969 8090961 ~ 8099615 (-) True AMCG00011025
AMCG00011024 mRNA downstream 252509 8082418 ~ 8090075 (-) True AMCG00011024
AMCG00011035 mRNA upstream 21902 8364720 ~ 8380701 (-) True AMCG00011035
AMCG00011036 mRNA upstream 100497 8443315 ~ 8452241 (-) True AMCG00011036
AMCG00011034 mRNA upstream 120396 8463214 ~ 8464498 (-) True AMCG00011034
AMCG00011041 mRNA upstream 206015 8548833 ~ 8555531 (-) True AMCG00011041
AMCG00011040 mRNA upstream 235813 8578631 ~ 8582714 (-) True AMCG00011040
TU129762 other downstream 323062 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2594020 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 3202128 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3692478 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 4156610 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 476733 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 512087 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 891593 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1259066 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1398315 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile