RNA id: TU129921


Basic Information

Item Value
RNA id TU129921
length 1657
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G103959
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8584130 ~ 8590598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAGATTAAATTAgtcaattaacatttaatttaatcattttcagtgtaacagtttatttacaaaatatacatggattttattaatttaatctaacAACTCAATTACTCTTCATGGATACACATGTAACTGCCTCCAATGTTTCCCCATTATCAAAAACTGCTGAAAACTTGTATTTACACATACTGTACAAATATACACTTACAAATGCATAATAAACAGAGGACACTTCTGGGCATTCAACGATTTACATAACGAACATTGGTTATATGGTAAAAAGGTAGGTTATAAATCTGGCTTAATGTCAGATTGATACAGAATGTGGCCCACAGGTGGCAACATGGGGTCCTGGAAGAGGTCCAGGCTAAATAGGCAACCATTCGTAATCAATTGATTAAGGCCTGGAGCAATGAAACATGCAGGTTTCTAACCCACAAACACTTCCAGACGAGACCCCACTCttaacaaaatcaacaaatgtGGTTGTTTGACAAAGCAATTAACCCCAGAATCATCTATGAACTGCTTATATCTATACATTGTCATATGCAAAGATTCAAACATATGTATAACAGgtttataatatgtaatatatatatatgaggagTCTTATTCCATGTATTTCAAGGATACACAATGTATCTCCATCATATTACATGGAACTCCCAGTTGTTATTCTAATGTAGGTTTCCCTTCACATTCCAGAAAAGCTGTGTTACATAGAAGGGATCAGATGTCAGGAAACTCCTCAAATAACATTTGGTTCTTCAGTTTCTTACTTTTTTTACCACATCAATATTCCccttctacattttattttaatgcagcatTAATAGTATTCCACACAAATACTTTGTATAACCCTTATATAAATAGTAAAGAATGCTTAAAGTCCTGCTACTGAAATTTAgctcattaaatgtattaatcatttgACAGATGCTTGTTATGTAAAGCAAGTTACAGGGATAAGGCGCGTGAACGATGGCACCAGCAGCTGCTGGTTAATTTCTTTACAACAGGCCCCCCGTTTAACATCTCATCTCATGGGCAGAGAACGAGGGAGTAATACAATTTGCATATGGTAAGCGATTCAATGTGGGAGCTGAGGCGAGAACGGTTATATTTCCAGTAAACAAGGCCTGGCCAAATGGAGGACTTAGCCTAAGTGTCTGGCCCCTTCCTTTACCCATATCATCTTTTTTATAAGAATTGATTCCAGTACTACAAAAAGCCCTAGCACCAATACTGATAAGGCCCACACATGTAAAAagtggtattttattttctgaattgtaGCTAGTAGCCCCCTTCTCCATCTATCCTCAATTTGAGGTTTTACTTGGAGATCCCTGTCCAtctttcacatttcacaaatagTGAAACCTGTGTAACAGTTTCATGGATAAGAATAGAAGCATTAATATCTCTCAGCTCTCACAAGGAGTTCAATACACCATGTGTccatacaataaatatttaaatcagacCATTGACTTCACTTCTAGATtttcccccacctcccctcagATCAAACGGCNNNNNNNNNNNNNNNtttagttttttttttagattttcatAAGTTCTGAGAAGTAGcaaatcatttgttttgtattttaacctAAAGCATGATTAAATTGTAGTTTATTTCTCGTGCaa

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129810 lncRNA upstream 474895 8102395 ~ 8109235 (+) True G103868
TU129817 lncRNA upstream 483112 8090966 ~ 8101018 (+) True G103873
TU129788 lncRNA upstream 514435 8061279 ~ 8069695 (+) True G103850
TU129747 lncRNA upstream 549437 8032729 ~ 8034693 (+) True G103823
TU129719 lncRNA upstream 596217 7985084 ~ 7987913 (+) True G103800
TU129954 lncRNA downstream 128350 8718948 ~ 8721777 (+) True G103987
TU129978 lncRNA downstream 255368 8845966 ~ 8857639 (+) True G104004
TU130035 lncRNA downstream 357175 8947773 ~ 8948823 (+) True G104042
TU130013 lncRNA downstream 377280 8967878 ~ 8970770 (+) True G104029
TU130060 lncRNA downstream 567723 9158321 ~ 9159219 (+) True G104062
AMCG00011038 mRNA upstream 6496 8568713 ~ 8577634 (+) True AMCG00011038
AMCG00011039 mRNA upstream 17060 8559200 ~ 8567070 (+) True AMCG00011039
AMCG00011037 mRNA upstream 37185 8537494 ~ 8546945 (+) True AMCG00011037
AMCG00011033 mRNA upstream 123270 8452328 ~ 8460860 (+) True AMCG00011033
AMCG00011032 mRNA upstream 150747 8427706 ~ 8433383 (+) True AMCG00011032
AMCG00011043 mRNA downstream 53725 8644323 ~ 8654378 (+) True AMCG00011043
AMCG00011044 mRNA downstream 78461 8669059 ~ 8693522 (+) True AMCG00011044
AMCG00011045 mRNA downstream 214153 8804751 ~ 8806377 (+) True AMCG00011045
AMCG00011047 mRNA downstream 237719 8828317 ~ 8838500 (+) True AMCG00011047
AMCG00011048 mRNA downstream 344490 8935088 ~ 8938784 (+) True AMCG00011048
TU129898 other upstream 31525 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 1663199 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 1941502 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 3941772 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 4500544 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 939876 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 2228090 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 3075600 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 3218248 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 3251531 11842129 ~ 11844089 (+) True G104435

Expression Profile