RNA id: TU129954


Basic Information

Item Value
RNA id TU129954
length 2520
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G103987
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8718948 ~ 8721777 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAATGTATTAAATGACAAGTTTATTGTTGCACCGAATGTACAAAATAACAAGCAAATGGACACTTCTCTCTGTTCTTTCATCAATATGAAGTTATAAATCTAAAACCTATGACTAAAGAGCATGTCCAAAGGTCCAAGGCAATGCATGGGTTAGAAAGACGACACATATCCAATTCCAGATTTActtaacaataaaaatgaataaaaacacattatttacaaGTCTGTCAGAACGTATACAACATGccatctatatatttatacagtatatgaatGTACACATATAcgtgtatataaaatatattattagatcAAGTTAAACTTTCTAGCGCTACGAATATCCACGGTACAGTACTGCTttattctttttgtatttttgtttttttttgtatttttgtatttatttttttcctatccAATTCATTTTTGCCTCGGCCATTTCTTTAcccattactttttatttcaaaagaaaggATTCTTTAGCCTGTTCATCACAAGCACATGCTTTAAACTGCAATCAGAGCCTTGATCTGATACAGTTTACACATGTGGAATACCCTAACGCTCTTGGCTCCTCTCATTTCACCCAATATCATCTCCAGTATATGCGCTTTAAGGTCTTGGAAAGTTGCATTATCTTTCTTAGGGATGTTCTCCCTGCATGGTTTCGAATCCATTCTGTAAACATTGCTGCATATTCAAGTCTTGGTAGATATACTGGTCTCCAcccccttattattattattttaaatattattaaatgtatttatttatatgaggTAAAATCATAGCGATGCTGTTGTTCCAATACTTAATTACATCTTACATGATGCTAGCCATCATGACAACCCTATGACTCTACCTCAGCAAGCACCGTTcagatttataatttaaatgaaagacaCTACTATCTGTATAAACAAATGTGCGACTATGGCATCTTCCTTTAAGGGATTGGAACGTATGTATCCTGGACTGTTTGCAATCTCCGAAATGGTCATTTAGTagaactctgtttacagtgaacagCAACTCGGTGATGTAGAAAATGCAACttgttgtttaaaagaaaaaaaaaaaagtgttattgtATCCCCTTCTCCAAACTAAAAGAGTTCCTGTTTATCACATTGACACAGTCAAATATGATGTATAGCAACTCAAAAAAAGCACCCAAACCCCCCCTCAAAATGatactgaatattttaaatcaaggaaaaaaaagaggaataccttttttttttttttttaaacctcccTGTATTTCTTGAGCAGACGAACGATGATGGTGCATTGACAATTCTGCAGTATTTCGAGGCCGTGGTAGCATGTTATCTGTTGTATTCATAAGAACATTTAAGTTTACGTAAACGTTATTATTATGCCCCAAATGCTGCCTTATATTGCATTACACTGCTACTGCCTCTTGTTGCTGAGGTCAAGGGGGcttcattcatgtatttctcTGGTTCAGCTTCCAGACAAAATACCCAAACCAAGAAGCTGTCCATATTGAGGGTTAAGACAAATAATTTTGATCCTAGTCTCAAACTTGAAACTGTGGATTTGTTCCAAAactatatttgtgtttgtgttttttaatcatcAAATTAAGTTCAAATTGCATGAAGCTTAAATATTAATGGAACCTAAGACAGTTTTTTGATatgttaaaaatgcatcttCCAGCTGGCAGGTTGTTAGTTTATTAAGTAAAttctcaaaagcaaaacatttcagacGTCTTAGATGCATTAGCAAGGCAGATAGCCAATCAGGTTTCAAGGAAATGGTAGTATTACAGGAGTCACATGATTGCCTCTAGGCTAGGGCTGCTACACGGGAGAGATGGACACCCATGGTGACACAGGCCCTGCCATAGGTGACTGAACAGACTGAGACCAGTGGAGATGATGGGATTCCCCAATGAGGATTAATGCAGGAATATGGAGATAACTGTACAGTTCTTTTCTAGCTTGTTTTTACGGTGAGACCAAGTGATGGCATTTTCAGTGAGTGCAAAAATACTCTTCAGACTTACATTGTAACGATGCAAGAACCAAGTAaatggacttttttttaaaaagtttaaacttttaatatacttttatttctcttatctatttttaatttgtactttgtattttatttatgtatttatttattaactattttttatttatttttacaaaatgagaGACATGGAGATGAACGATTgacaatatactttttttttcttattcttcctTTCAGGTTATTGACATTgaaataattttgcattttaattcatgtaaacaaacacattactGAGGTCGAGTTGCAGAGACTGTCGTGTTGCTCGTTCCATTGCAGTCTCCCAGGAACcccttctctctgttttttttcttttctctgttccgtgctttttctctctctccctccccgtcactctctctcactgcagcATGGCCCTGATTTGTTTGGAGGTGCTATCATCATTTAGATGCCGTGTGGTGTACCTCAGGGCGTTCAGCAGTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129921 lncRNA upstream 128350 8584130 ~ 8590598 (+) True G103959
TU129810 lncRNA upstream 609713 8102395 ~ 8109235 (+) True G103868
TU129817 lncRNA upstream 617930 8090966 ~ 8101018 (+) True G103873
TU129788 lncRNA upstream 649253 8061279 ~ 8069695 (+) True G103850
TU129747 lncRNA upstream 684255 8032729 ~ 8034693 (+) True G103823
TU129978 lncRNA downstream 124189 8845966 ~ 8857639 (+) True G104004
TU130035 lncRNA downstream 225996 8947773 ~ 8948823 (+) True G104042
TU130013 lncRNA downstream 246101 8967878 ~ 8970770 (+) True G104029
TU130060 lncRNA downstream 436544 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA downstream 436544 9158321 ~ 9159185 (+) False G104062
AMCG00011044 mRNA upstream 25426 8669059 ~ 8693522 (+) True AMCG00011044
AMCG00011043 mRNA upstream 64570 8644323 ~ 8654378 (+) True AMCG00011043
AMCG00011038 mRNA upstream 141314 8568713 ~ 8577634 (+) True AMCG00011038
AMCG00011039 mRNA upstream 151878 8559200 ~ 8567070 (+) True AMCG00011039
AMCG00011037 mRNA upstream 172003 8537494 ~ 8546945 (+) True AMCG00011037
AMCG00011045 mRNA downstream 82974 8804751 ~ 8806377 (+) True AMCG00011045
AMCG00011047 mRNA downstream 106540 8828317 ~ 8838500 (+) True AMCG00011047
AMCG00011048 mRNA downstream 213311 8935088 ~ 8938784 (+) True AMCG00011048
AMCG00011053 mRNA downstream 232429 8954206 ~ 8960198 (+) True AMCG00011053
AMCG00011056 mRNA downstream 400620 9122397 ~ 9126585 (+) True AMCG00011056
TU129898 other upstream 166343 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 1798017 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2076320 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4076590 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 4635362 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 808697 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 2096911 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2944421 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 3087069 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 3120352 11842129 ~ 11844089 (+) True G104435

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2621337 False 1495 lncRNA 0.42 4 NC_050572.1 6470392 ~ 6529498 (+)
eurasian perch (Perca fluviatilis) TU270745 True 426 lncRNA 0.45 1 NC_053131.1 2971934 ~ 2972359 (-)
striped catfish (Pangasianodon hypophthalmus) TU270745 True 1082 TUCP 0.43 5 NC_047608.1 19756310 ~ 19759728 (+)
mexican tetra (Astyanax mexicanus) TU270745 True 2054 lncRNA 0.38 2 NC_035919.1 23782931 ~ 23785959 (+)