RNA id: TU129978


Basic Information

Item Value
RNA id TU129978
length 1623
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G104004
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8845966 ~ 8857639 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGAACAATTAAATCAGCTTTTATTGGAGACATGCAATAATTTCACCAGAAAGGTTAAAATATGGTTACAttcagtgcttaatttgtaaatcagaagGTGCTGGAACGCAAAGCATATATGAGAGCGGAGGGGTGACGAGGCAGGCGCATGTCCTGGAACAGAACAGTGCAGAATATGAGAGCAGGATCAGGCACATATTAAGCACTGGTTACATCGTTTTTTGTCTTCACAGTAGTGCCAAGACTGCACCTACAGCTCCACCAACACTTGCTACAGCACCAGTGGCTGCTGTGGAAAGTCCAGCTGCTCGATTGACTGGAGCACTGCCACTGTACTGCCCGCTGCAACTGCCCCGCCGTTGGCAACTGCAGCGGACGACATCATGCCAGCCGCATAAGATCCAACCGCTATCCCCCCGGCAGTGAAGCCGATTCCACCAAGAATCAATGGTAAGCCGACCACAGAGCGATTGACTGGAGCACTGCCACTGTACTGCCCGCTGCAACTGCCCCGCCGTTGGCAACTGCAGCGGACGACATCATGCCAGCCGCATAAGATCCGGCCGCTATCCCCCCGGCAGTGAAGCCGATTCCACCAAGAATCAATGGTACAGCGGCCACCGAGGCACCTTCACAACAAAGCCAAAAATTAAGCATTGTCTGAGCTCTGGGAAACACTGGTACagagttattgttttattttaattgaatcgCAATCATGACTGCCCCAATTTGCACATGATAATCCACTCCCTCCCGATCTCAGCTCACACCCAGTTCAAGGCATTGACTCCTACCTACTGTTGTCTTGACCAGACTGCACTGAGCTatcttcagaccctcatctctctgtTCATTCCCTGACCTCTGCAATCCTCCTGCACTACACTACTTTTGTGATAACCATCATGTTTTTACGTGATACTGAACTAGAATACAGgagacaaaacaatgatgtcagACGTTAGGGATTTTATACGAACTTACTTTAGGTTGCTACTAACTCAATACTtatccaattacattttaaatcacaaacacaatcaatcttaaaaatatctgtgaaaaaaCAACGCACCGTTTCGCTTTAATCAAAGTCCATGCGTCCatcatctttatttacacattttcttcaaaacaaggtaCAGGTGGTTGAAAACCGGTCTGTGACCCAACAATACACCATCTATCCCCCGCCCCATCCAATTTCCTGAAGTATTTCACTCCTTTCTCACCCAATTATCAATTAACTTAATGATCAagttatcaaatgaaaaataattgaattatgtatagtcaatgcaacatacagaaatacaagttatacaaaacatattattataaatgtttattaatacataaattggCTGCTACAAACATTACTATTTGAAGATCAGGAATATGTATGTGATCATGGACAAACAGAGCATGTCGATCAAATTGAATCTGGGACATCTCAGTAATAAtctaataacttaaaaatagaaactactcaatatgaattatcctgaacaaatgcacagtatgTATATCGTCAGACTATCGTTTTAGCCTGGGTCgaaacatacatacacgcaGTATATATGACTCCCCGCTTATTTgtaacattcacacattatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129954 lncRNA upstream 124189 8718948 ~ 8721777 (+) True G103987
TU129921 lncRNA upstream 255368 8584130 ~ 8590598 (+) True G103959
TU129810 lncRNA upstream 736731 8102395 ~ 8109235 (+) True G103868
TU129817 lncRNA upstream 744948 8090966 ~ 8101018 (+) True G103873
TU129788 lncRNA upstream 776271 8061279 ~ 8069695 (+) True G103850
TU130035 lncRNA downstream 90134 8947773 ~ 8948823 (+) True G104042
TU130013 lncRNA downstream 110239 8967878 ~ 8970770 (+) True G104029
TU130060 lncRNA downstream 300682 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA downstream 300682 9158321 ~ 9159185 (+) False G104062
TU130080 lncRNA downstream 365546 9223185 ~ 9226178 (+) True G104079
AMCG00011047 mRNA upstream 7466 8828317 ~ 8838500 (+) True AMCG00011047
AMCG00011045 mRNA upstream 39589 8804751 ~ 8806377 (+) True AMCG00011045
AMCG00011044 mRNA upstream 152444 8669059 ~ 8693522 (+) True AMCG00011044
AMCG00011043 mRNA upstream 191588 8644323 ~ 8654378 (+) True AMCG00011043
AMCG00011038 mRNA upstream 268332 8568713 ~ 8577634 (+) True AMCG00011038
AMCG00011048 mRNA downstream 77449 8935088 ~ 8938784 (+) True AMCG00011048
AMCG00011053 mRNA downstream 96567 8954206 ~ 8960198 (+) True AMCG00011053
AMCG00011056 mRNA downstream 264758 9122397 ~ 9126585 (+) True AMCG00011056
AMCG00011055 mRNA downstream 283959 9141598 ~ 9155179 (+) True AMCG00011055
AMCG00011062 mRNA downstream 434994 9292633 ~ 9297651 (+) True AMCG00011062
TU129898 other upstream 293361 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 1925035 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2203338 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4203608 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 4762380 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 672835 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1961049 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2808559 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2951207 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2984490 11842129 ~ 11844089 (+) True G104435

Expression Profile