RNA id: TU130051


Basic Information

Item Value
RNA id TU130051
length 565
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G104054
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8964717 ~ 8965281 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCCACAGCCGGAATCAGACGCCTTGTTTTAATAGAATTTGTTTTGAAGGGATCTTTGCACGTCTGAAACACGTTTTAAATTACCCTAGACGTCAGTGACTCAATACTGTCTTGTGAGCACTGTACCCTGGgaataaaatgttcatttgatGTTACAAGTTGTAATGGTGACCATATTCACTGTGGTGCTGAATCTGGAAGTGGAAGTGCGTGTCATGTCGagtttttggtttttgtatttgttttggtttctgtgATGTGGGAAATGATACGCAGGTCTCTCTTGCTGCTCGCAGGTGAATCTCCTGCTCCTTCTCCTTCCACACCTGTTTCCCTTCTAGCTATACACTGACCCTAACAGATTCCATTACATTGTCAGAGACCACAAGAAAGCAGATGCCAATTTTATTCTAGAATAACTGCCTCCCAGAGCGAGTTGCTCTTGACAGATATTTTCATGTGACATTCAATAGAATGTTAATaaaaaagatttacattttgtataatttatatatatgtgggACGTTTCTTCACATGAGCAATAAGCTGTGGGTTAACTCCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129987 lncRNA downstream 114756 8845964 ~ 8849961 (-) False AMCG00011051
TU129971 lncRNA downstream 153695 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 502055 8460930 ~ 8462662 (-) True G103929
TU129849 lncRNA downstream 621899 8342584 ~ 8342818 (-) True G103903
TU129846 lncRNA downstream 623129 8341363 ~ 8341588 (-) True G103900
TU130052 lncRNA upstream 91 8965372 ~ 8965579 (-) True G104055
TU130116 lncRNA upstream 272510 9237791 ~ 9265487 (-) True G104098
TU130156 lncRNA upstream 445308 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1758309 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1980720 10946001 ~ 10946274 (-) True G104278
AMCG00011052 mRNA downstream 11968 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011050 mRNA downstream 34119 8913441 ~ 8930598 (-) True AMCG00011050
AMCG00011049 mRNA downstream 78012 8866341 ~ 8886705 (-) True AMCG00011049
AMCG00011051 mRNA downstream 100666 8843189 ~ 8864051 (-) True AMCG00011051
AMCG00011046 mRNA downstream 229134 8721384 ~ 8735583 (-) True AMCG00011046
AMCG00011054 mRNA upstream 536 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011057 mRNA upstream 222429 9187710 ~ 9200667 (-) True AMCG00011057
AMCG00011058 mRNA upstream 256987 9222268 ~ 9236228 (-) True AMCG00011058
AMCG00011059 mRNA upstream 274080 9239361 ~ 9249868 (-) True AMCG00011059
AMCG00011060 mRNA upstream 288852 9254133 ~ 9260814 (-) True AMCG00011060
TU129989 other downstream 101051 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 101051 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 945195 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3216153 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 3824261 5134210 ~ 5140456 (-) False AMCG00010939
TU130111 other upstream 269130 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 636603 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 775852 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 3030132 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 3102184 12067465 ~ 12069079 (-) False AMCG00011135

Expression Profile