RNA id: TU130278


Basic Information

Item Value
RNA id TU130278
length 238
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G104221
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9872653 ~ 9872890 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctggaacagaggagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagagagttgtcacaatctgaacaaactccccagcgatgtgggtgaagctgaaaatttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130260 lncRNA upstream 125789 9693144 ~ 9746864 (+) True G104204
TU130186 lncRNA upstream 390979 9477567 ~ 9481674 (+) True G104150
TU130182 lncRNA upstream 396810 9474174 ~ 9475843 (+) True G104147
TU130139 lncRNA upstream 520066 9352373 ~ 9352587 (+) True G104115
TU130080 lncRNA upstream 646475 9223185 ~ 9226178 (+) True G104079
TU130296 lncRNA downstream 396914 10269804 ~ 10271863 (+) False AMCG00011089
TU130328 lncRNA downstream 682839 10555729 ~ 10617196 (+) True G104255
TU130347 lncRNA downstream 850660 10723550 ~ 10723890 (+) True G104271
TU130396 lncRNA downstream 1499664 11372554 ~ 11377085 (+) True G104307
TU130401 lncRNA downstream 1545776 11418666 ~ 11420066 (+) True G104310
AMCG00011082 mRNA upstream 140210 9723810 ~ 9732443 (+) True AMCG00011082
AMCG00011079 mRNA upstream 280466 9591072 ~ 9592187 (+) True AMCG00011079
AMCG00011080 mRNA upstream 290908 9575129 ~ 9581745 (+) True AMCG00011080
AMCG00011081 mRNA upstream 297949 9566520 ~ 9574704 (+) True AMCG00011081
AMCG00011075 mRNA upstream 315266 9551804 ~ 9557387 (+) True AMCG00011075
AMCG00011087 mRNA downstream 145672 10018562 ~ 10018933 (+) True AMCG00011087
AMCG00011088 mRNA downstream 200832 10073722 ~ 10087704 (+) True AMCG00011088
AMCG00011090 mRNA downstream 266571 10139461 ~ 10192241 (+) True AMCG00011090
AMCG00011089 mRNA downstream 330727 10203617 ~ 10270251 (+) True AMCG00011089
AMCG00011091 mRNA downstream 625587 10498477 ~ 10503466 (+) True AMCG00011091
TU130204 other upstream 339239 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 1320048 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2951722 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 3230025 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 5230295 4638432 ~ 4642358 (+) False AMCG00010922
TU130349 other downstream 945798 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 1793308 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 1935956 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 1969239 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 2193604 12066494 ~ 12067337 (+) True G104550

Expression Profile