RNA id: TU130401


Basic Information

Item Value
RNA id TU130401
length 1380
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G104310
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11418666 ~ 11420066 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagagagagagagagagagagagagagagagaggctgaaaTTTATCATTCTGTTTTAGTCAGAGTGCCTGCAGGGAAACACATAGAAGTTAAATGGCTGTTGTGAACATTAGTGTCACTCTCCTgcagcacactgcactgtgtgcCTGTATCTGTACATTGGAACAGAAGGCAGATTTAGTCACACATGACatctgtccagtccagtctctctctcccactgtgGACAGACAGGGTGACATTTCTCTGGTGTGGGCCATGCAGTGCGGGCCAGAGAGGACGTATATGTGCTGTCCCTCTGTCTTTCTGGTGGTCTGataacaccccccccacacagcaCCTCCCTTACAGACAGCACCCACACCTGCTATACACCTCTTTTTCAGGAAACTCATTCATTGTTTGGttgtccttgtttttatttgtaggcATTACAGGGGGGCTGCTTGATTTTATCCCCCCTAAAACTGATGGAcccactttattattattattattattattattattattattattataagaattGTTGCTGTCAAACGTTGCATGATGAgattgtgtaattttttttttataatttctgtCTCAAATTACTTATGAAGCCTTTCTTtgtacttaaaattaaaaaaaaacataaagaaataattaactatatacatatagtagagggggtggggaggcaTTGAGAAGCAGATTAAGTACAGTACCCAAGCTTTGACCTGCTGGTTAATTTGCAAATTACAAGTaaatcaaaaccaaatcaaaacaaaatgcttaaaaaaaaatctgccacCAGTGCAGGGATTAGAATGAACACTTAGCACGTGTTAGAAAAAGGTTGGGATTTGATCCAAGTCTCGGCCTCTGTGAGAACTGTGGTCCAGTGTTTGGGCTGCTTTCCCAGGCTGTGACCATAAGCAGTTCGTGCAGATATTGGCAAAGTCCTGGAGTGGACCATTGCACCCAGTGGCTCGGTCTGTGTCCCATTGCCAGAGGGTCTCAAAACTGCGCTCTCCTTTTCCATTTGGATGAGAGGAGATCTCGGTCcgtttcatttttgtatttctaagtTAAAgaatatttgcaaattaaatgaatgtacacTTTTATTGACagaatgatttataaattatattgctTTCACTTGTGGTTATTGAGTCTCCagttgcttttttccttttttttaaactgctaaTGCTTGTCACAACAATTTTTGTGGATAAATTGTACTGTGTACCTTCATTTTCTATggcttaaatattttttttcttcttttccctttttttaatatcCTGTCTGTGTAATATAAGcatacatgaaaatatatatataaaaatgtaatataaaagcCTTGTTTCGTGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130396 lncRNA upstream 41581 11372554 ~ 11377085 (+) True G104307
TU130347 lncRNA upstream 694776 10723550 ~ 10723890 (+) True G104271
TU130328 lncRNA upstream 801470 10555729 ~ 10617196 (+) True G104255
TU130296 lncRNA upstream 1146803 10269804 ~ 10271863 (+) False AMCG00011089
TU130278 lncRNA upstream 1545776 9872653 ~ 9872890 (+) True G104221
TU130425 lncRNA downstream 112854 11532920 ~ 11593994 (+) True G104326
TU130484 lncRNA downstream 223951 11644017 ~ 11651021 (+) True AMCG00011110
TU130570 lncRNA downstream 424344 11844410 ~ 11844623 (+) True G104443
TU130571 lncRNA downstream 424620 11844686 ~ 11845805 (+) True G104444
TU130572 lncRNA downstream 425922 11845988 ~ 11846253 (+) True G104445
AMCG00011102 mRNA upstream 5714 11399849 ~ 11412952 (+) True AMCG00011102
AMCG00011101 mRNA upstream 48969 11351902 ~ 11369697 (+) True AMCG00011101
AMCG00011100 mRNA upstream 71655 11303064 ~ 11347011 (+) True AMCG00011100
AMCG00011099 mRNA upstream 165818 11219888 ~ 11252848 (+) True AMCG00011099
AMCG00011098 mRNA upstream 246695 11136716 ~ 11171971 (+) True AMCG00011098
AMCG00011106 mRNA downstream 52733 11472799 ~ 11490031 (+) True AMCG00011106
AMCG00011109 mRNA downstream 79499 11499565 ~ 11500270 (+) True AMCG00011109
AMCG00011107 mRNA downstream 107144 11527210 ~ 11530729 (+) True AMCG00011107
AMCG00011105 mRNA downstream 122922 11542988 ~ 11552978 (+) True AMCG00011105
AMCG00011108 mRNA downstream 154474 11574540 ~ 11587206 (+) True AMCG00011108
TU130349 other upstream 599243 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 1885252 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 2866061 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4497735 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 4776038 6641983 ~ 6642628 (+) True G103542
TU130500 other downstream 246132 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 388780 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 422063 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 646428 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 1105294 12525360 ~ 12527031 (+) True G104694

Expression Profile