RNA id: TU130411


Basic Information

Item Value
RNA id TU130411
length 5456
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G104319
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11420749 ~ 11426225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acacacacattttaagaaCAAAACTCTCTATACTGTGTTGTCAATGTAATTGAAACCAGAAAATCTACatttaggagaaaaaaaacattttcttttcatatttcatattcaataGGAAATGTGTCATGGTATATTTCAGATACACGTATTCTGGGTGTGGGAGACATCCACAGAAGGTTGgtagttgtgttgttgtgtacaGTCTGGTTCTCTTTTGAACAATGGATAATGGATGCTCTGGGGGCAAGAATGCATGCTCTGATTTCCACCAAGGTGTTGAGAACAAACtgcctaaaaatatataaaagagaaATTCAAACTGTTACCCATTGAAAACAAAGGACTATACACCTCTCAAACAAGACTTTACTAGAGCTAAAATTACTATGTAAATGGTTTACAAAAGATTTACAAGTTATCATTTTGCTGGCAAAACTAATTTGCCATCCAGTGGGGTCACATGGGTGCCAGAGGATTCTGTCCGGATCTTGGAAAATAAGGAGATTTTATTTCCGAATGTGCGGTATGGTTCCTGGCTATCCAGCTGACTTCAGTTCCTTTGGCTTTGTTTGTgagcacaacaacaaaaataggagaattaaataaatatatctgctttccattttcttatttattttgtaaatggtttatttatttatatggaaGCAAGCAAGTTACCACCTGTGGGACTGTAGGTTTTCTTGGCTATGTGTTTAGTGGAAACCTTTATTTCTTAAAGAACTATAAGCactataagagagagagagagataaagagagagagagaggctatTTGATGGTTTTAAGCTTTTGGTTGAAAGATTTAAATATCTCCTGTCTTTATTTTGGAGATTAACAAAGCAATTAAGGCCCATAAGACAATTCCTTTACTCGCTGTGCGGGTAAGGCTTACTCTAATGACCTGCACCATATAAATCTTTACCTTCTGCACAATTGCAGATGTATTGTTGTATTCATCACTGCAGTATCAGTTATCTTTGTTCTGTGAGTGAGGGACTCcagggagggggaaaaaactaatggactaaaaaactatttaagaGCCTGggtacttttattattatttgcacacTTCTAAACTAAaggcaaatatataaaatataaattatgccTTTGTGATCACTGATAGAAGTATGTACTGATAAAGtggacatttaatttatttaaaacaatggcaTTGTTTATTAAAGCTACATTTTTCATAGAAAGTATGTCTATCTATATAACCCTTAATACGTATTAATCTATGCTGTGAATGTTATTGTCCTTGATCTACattatgaaattaatattaGACATTAATAATTTTTTGAACTGTGTTACTTCTTGTGTGTGATCTCAAGGCTGTATGTACACGTGTTTTatatgtactgtactgaaagCAGCAACCGAGCATTAATGGTGATCAcaacactgtttaaaaaataggtatgcaaaatacacatacaaacactcAGTGCCAATCTGACTGTTTCAATTAAATAGGCCTacgcaaattattattattatttatctattccTTTAGCAGATTTTCACAGCATATGCCTGACTTTTGAAAGCTGGTCAAAAGAGGAACTAATTAGGGACGTTTGTATGTTCGTAAGAGTGACTTCATCTCACTCACAATGGCTGCAAAGAGCTCCCCTAAATAATCTTAATATTGGAAAAAAAGGGCAAATTATTCTAAACTGAATTCACACTGTTGGTCTCATTCTTGAGTAAATCATTAGACCACTGCAGAGAATCGGGTCCTGTCAGCGGCACTGAAAGATCTGCTTTGGCCGTCTCCTGTGTATGCCCTTGTGGAGATTTATCACGATAAATGTGCACGGTCACCAAGCAGTATCCCCCCCAAGGTTTTTCCCATGCATGTACTTTGTCTGGCCTGTGACTGTCCATGAATGTCCATGTGTCATGCTTTATTATAGCTTTACCAAggtttttactttactttccGACACTTGACTCTGGTTTTACCTTGGTTATAAACTGCTGCCAACGTGTTTATCATTGTGTTATCGAACCATGCTTGATTAGCATCCTTGTTACCGCTTTAAAAGACAATTTTAATTCCCAAGTCTCTCCTTTAACTGGCCGCTGGAGATGATCAAAGGCCACAAAAGTGAGTCATAATCAACAAGTCGCTGTGATAGAAAGTAGGAGCAGACATAGGCCAGTTTGCTACATTtccaatgttttgtgttttgtttttgtttgtcaggTTGAGTACCAAATTATTTACCCTGAATATCTGTACTGCATACAAACACTAACAAGCAGTTTGTTCATGATTGTTGTTGGACTATAGTATGTGAACTACCCAGCTGTTGAAATGGGGTTGCCTTTATTGCTATGCGTGTGGTCGAGTGCTGCTATGTTCTTACGAACACAGAGAGGTCTGAGAGGGACACTAGTGCACTGCTGGGTGGTCTGGCAGTGGAAGAGTTTCTTCCTCGTATTGAGAAAAACCTTCAGGGCTTTTCAGCTTGGACACGAATGTATTTCTTATTGGCCGAGGTCTTAATGAAAGAGATTTACAGGTATACCGTTTCCTTTCCTGCCAGAGGTGATGCCTCTTCTCACGCTATTAGATGTTGTTTAAACACTTTTTGCCAAACAGCATGACTTGATTGGAGAATGACAGGACTAGATTTGGACGGTTGCATTTTGGCTGGGCAGACATTATTCAATGTGGagcttattttttcttaattatttttttactagaGACAGGGAGAGCGGAGAGAGAgctattaaagttttttttttatatatatatatatatatatatatatataaagtagtAAAGGAGGAGCTGCAGAGCACAGAGGGCTTGTTTAGTTGTATGCCTTATatcatttgagaaaaaaagtggTTTGCTAAAGTGCCACAGAAGCATCgcttaatgttttaaacaaatgtatatttagtgtAGAATACATATTGTATTCAGATATAACTCTTTAAGATTTCTatgaatgtatttcttaaatgttttcacttgctgtatgttgcttttttctgaACTGCATTGCTACCAGAATCTTTTGAGAACATCTTTCTACAGgggctgtccttcctgtcttaCATGGACAGCAAGTCACTTGGGGGGGATTTCTACCCTGGTCTGACTACAgcagatttctttattttacagatggCTCCTCAGTGACACTAGGCAAAAACTAGAaacatagaaaaacagaaactttaaaatacagtccCTAAATAAACGCCTAACCCTTGTAAATGTCAACAAAAGAATTTAGTGCAAGGATCTATCTGGACTGAACTGCAGTAAAAACGCTCACACAGATGTGATGTTCTGATATGGAAATACTGCACACTTGCACAGGGGAGCTATAATCACATTCtgggaaattaaaaaagcattgtaagaaatataatttgcttTGTAGCATAAATATCGCCTTCCATATGTCACTGGCAATAAGTTCTTACCTGTCTGGGGTTCGGGGTGAGAAGAATTGTGCAGAGCACCCAGAGGGATCCTTGCAGTAAAGTCAATAGTTGTCTTGGTTTTCAACACGGGTCAGTGGAGCCTGTACGAGTCAGGACTCAGTGCTGGGGAGGCATGCTGATTTAGTTTCTGTTTGACATTcagtaaaaatgtatgttaaaaagTATTAATATGGAGTGTTTCTTAAGCAGGACAGTCCCCCCATGGCAACTAATGTACTTGGTAGGTTGAATTATGGATTTGAAtccacgcacacacgcacacacatataaacacagatCAGGGCTTTTCAATTTTGTTCCCAGGTACACATGAGCAGTCCAGTTGTCtgtttatgttcttcttattaaACTGGGAATTCTCAGGGGGAAACCATTGCAGACTTACAATGTGGCCGAAAGATCAACATGGGATCCTGGTCATACTGGGAACAGTGGAGTGCCACTGGTCTGAGCCTCTGAGAGCAGAGGAGAAGAAAGTATGAGTAGTGGAGCATGAACAAATTCAATCTTAGCTTTCGCGGCTCCGTTCTCCTCTCACAAATTACCTCATGAAGAATGTGAGCTTACcccaaacagacaaacattatatatgttAGATGTTACACCTACAATATTTGCACTACAGCCTCCACGACACAAGAGTAGGTCTGGTAGGCAAATAATGACAGAACATGCCGTTGGTGGGTCAGTCTGCTCTTGGTCAATGTTCCTGAGTACAGGGTTCTATCGTGCCTCTGTCgaggttttgtttctgttgttgtttttatcaccGGCATCATCattcttgttattgttgttgataGGGAACGTGGCTTTGGAAGAGCATTGCAGTTTGGCCCTAaggattaaataaatgtctttacGCTGTGTGGGACAAGAGCAATGAACAGCACAAAAACACCTTGCCGCATGGTTGTGAGAGAGCTGGTGCGAGGTTTGTGTGGCGTCGTGTTCTCAGTTGTGTGTGTAGAGCGTGGCGTGTCGGAAGACTATACTGGTGTCGATCTCAGGTCTGTTGCAAATATTCGAAgaacaaatgcatttataaacagTTAATCTGCCACAATCCACCAAACACAGAGAAACCAACATAAACTGTCCACGTATTCCTGGTTCTGTGGAGTGGGCAGTTTACTCATAGTTAGAAACTTGGACCCACTGTAGCACTACCAAGCTCAGggctgtgtttctgatgctttATCGAGTAATACACAATTCAAGAAATTTGAATCGGATTGCTTTCAACGCGCAGCAGAAGTATTTTCTGTGTGCCGCTGGTTTTGCAGGCCTGggagaaaacacaattatagCGCCACACACTGAGAACGCCACGGCCCCTCTCTCCACCTGGGAAGATAGACCGATCAGAGTTGTGGGGATTCTCTACTGCCACATGAACCGAAGCTCAGGGCACTATGCTTTGCCACTAGCTGTCAGCTTTACTTACTTCCCCTAGATGTTGGTTTTAGTCGGCTTACGGTACAGATACAgtatgaaaagggaaaaaataaaataaaaaaatgtaatagatgaaggatattttttatacatatatattataacttGCCTTGCCCACTTTTCTGTATccccaaattaaaacaaaataagtcgAGCTTCTAAGTGcaaatattgtactttttttgttgAAAGAGGGATATGcttaaacagaagaaaatgacaaaactgaaataattaaacaaaacagctgtaatTTTATACCTGtgctttgtaaatgttttctatgTGCGGTATTTGATAATGTGAATCTGGTATTTTTGTTCGTTTGTATGCTGCAGAACTCAATGACTTTAGGTGCACgcagttttgtaaaaaaataaaataaattataatattaaattgaacaaacaaaaaggctGAAAATTTTCACATCAAGCTTGTATCTGCATGCCCCTTGACAGCCAGACCAAGTCATTAAAATTCTATTCGACTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130406 lncRNA downstream 646 11416190 ~ 11420103 (-) True G104315
TU130354 lncRNA downstream 474475 10946001 ~ 10946274 (-) True G104278
TU130348 lncRNA downstream 696793 10723590 ~ 10723956 (-) True G104272
TU130156 lncRNA downstream 2007827 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 2155262 9237791 ~ 9265487 (-) True G104098
TU130443 lncRNA upstream 84998 11511223 ~ 11593619 (-) True G104341
TU130445 lncRNA upstream 160833 11587058 ~ 11594342 (-) True G104342
TU130492 lncRNA upstream 222780 11649005 ~ 11656833 (-) True G104376
TU130580 lncRNA upstream 237367 11663592 ~ 11697059 (-) True G104449
TU130673 lncRNA upstream 533013 11959238 ~ 11971002 (-) True AMCG00011125
AMCG00011103 mRNA downstream 25002 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011092 mRNA downstream 941601 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1667259 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011083 mRNA downstream 1670850 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011086 mRNA downstream 1678126 9742348 ~ 9742623 (-) False AMCG00011086
AMCG00011104 mRNA upstream 5481 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011112 mRNA upstream 226777 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011114 mRNA upstream 238899 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011113 mRNA upstream 277864 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 374536 11800761 ~ 11805757 (-) True AMCG00011119
TU130270 other downstream 1676964 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 1818008 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2184556 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2557083 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 569188 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 641240 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 899872 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 1009646 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 1122064 12548289 ~ 12548993 (-) True G104715

Expression Profile