RNA id: TU130425


Basic Information

Item Value
RNA id TU130425
length 1810
lncRNA type read_through
GC content 0.40
exon number 2
gene id G104326
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11532920 ~ 11593994 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaataatcctttaggtgagtgtacatataNNNNNNtatatatgttttctttttcttcttttttttaaataggtctCATCTGGCTTTCCTCGGGCGCAGagtttcatgtttaatttttttttaattgaatgttattttttcattcgcTTTGTTCGTTCCTTGCATTTGTTGGTGCGTTCATTTGCCTTTCCCTCTTGGCTGGCTTGACAAGGGAGGTGACTTCGCTGAGCTTTTATTGTTTGAGTTCCCTTATTGGTCTGATTGTGTGCGTTGTTAGAGAAGAGAGACACAACGCTTGGCCTTCCACCAGGTTGCTGAACCCCCTCATGCATTGCTCTTTCTGTTAGGAAGGTAGTTGGACTGAACCCACCGATAGGGGCCAGCCAACGGGACTCCCATTGCACAGCAAGGTGGCTCTAGTATAAGGTTTCACAAATTGTCCGCAGAACTCTGCCAGGGCCCCTGTCCTACTGAGTGCTTcttaccaaaaacaaacactgacccATCGTCAGCAGATCAATAATAAGCTTGAACTTCTGCTCATAGTCATGGCTCTGGTGTAGGGCTGTGTGGTAACAATATGACCTGGGCTTGTACCCCCAACATGCTACACACCTGGAGCATAGCAGAGTGCTGTGCAATGGGAGTCAGATTTTCTTTGCACAGCCCGTTACAACAAACAGGTGCCTAAAAACAACAGAGGGGGTAGCTGTATCAGGGCATCAAGACCCCAAGACCCCTGACTCAAGATCTTCTTGCTAGGCCAGCCTAAAAGTCCTacttaatatatttgaaagaagatattttttattgatcATAGTCttaatctattttgttttgtactttgtttgtaCCGTGATGATTACCTATGCagaactattattattgttgttgttattaatattattatgagtaTTATTAACTGTAAACTACAGCTTAGCTTCCCCTGTAAACCAAACCCTCTCAGTTGCACTATTGGCAGAGGCTTTGAAGGTGCTTAATCTCCCTGAAAACAgaacatatgtttttaatgatgatgatggtggcgACTATTCTTATATGTAATcaaagtctgtgtgtgtacttgAGAGGGTAAAGGGGGGGATGTCTGCCAAAGTCTGTTCAGTGCTGTCTCCATGATTATCATTCATTACTTCTCCACCTGTTTTGTGAGCCAAATCATGTAAAAGTCTAATcgagcttattattattagttcatGTACAGTTTCATTGAAGTACCTAAGGGCTCGTTCAGAACACAAACCAATGGGACACTGGGGCCATGTTACAGGCAGTAGTGCTGGTCAGAGAAGGtgatgtacaaaaacaaaccaaaataaaacatctgatgatttctttttttttttttaatgttgttttcagGTTTGTAGTAAGAACGTTGAGCCTCATCACCGAGTGGCAGATTACAATCTGTTAAATACATCAAGAAACGGAGAAAGCAAAAGTACAATGacaaaactgaaaggaaaattgTGTGAAATGGTGTGTAGCAGCTAATAGCAATCATACTGAGAAAAGTTCAGATAAGGTTGTGCGTCTCTCTAATTTTCATTCTAAGCGGACCATTTATAACATCACAGTGATGAAAGTCTTGTGGCAGATTGTCTATCATTCTCCAGAGAGAGGAGTAATGAATCTGGCTTCACAACAAGGAGGACAAagaatgttttagtttttttgttgagATAGTGATAGTGATAGTCGTTTTACAAGAACAAGTAAATGGACACATTTGCTTATCTTGGGATGCTgccagacacaaacaaaacatgaacataaaTCTCCGTTa

Function

GO:

id name namespace
GO:0044448 obsolete cell cortex part cellular_component
GO:0032156 septin cytoskeleton cellular_component
GO:0031105 septin complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130401 lncRNA upstream 112854 11418666 ~ 11420066 (+) True G104310
TU130396 lncRNA upstream 155835 11372554 ~ 11377085 (+) True G104307
TU130347 lncRNA upstream 809030 10723550 ~ 10723890 (+) True G104271
TU130328 lncRNA upstream 915724 10555729 ~ 10617196 (+) True G104255
TU130296 lncRNA upstream 1261057 10269804 ~ 10271863 (+) False AMCG00011089
TU130484 lncRNA downstream 50023 11644017 ~ 11651021 (+) True AMCG00011110
TU130570 lncRNA downstream 250416 11844410 ~ 11844623 (+) True G104443
TU130571 lncRNA downstream 250692 11844686 ~ 11845805 (+) True G104444
TU130572 lncRNA downstream 251994 11845988 ~ 11846253 (+) True G104445
TU130632 lncRNA downstream 320500 11914494 ~ 11917031 (+) True G104479
AMCG00011107 mRNA upstream 2191 11527210 ~ 11530729 (+) True AMCG00011107
AMCG00011109 mRNA upstream 32650 11499565 ~ 11500270 (+) True AMCG00011109
AMCG00011106 mRNA upstream 42889 11472799 ~ 11490031 (+) True AMCG00011106
AMCG00011102 mRNA upstream 119968 11399849 ~ 11412952 (+) True AMCG00011102
AMCG00011101 mRNA upstream 163223 11351902 ~ 11369697 (+) True AMCG00011101
AMCG00011111 mRNA downstream 44008 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011110 mRNA downstream 50148 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011115 mRNA downstream 214914 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011116 mRNA downstream 239850 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011122 mRNA downstream 349605 11943599 ~ 11946001 (+) True AMCG00011122
TU130349 other upstream 713497 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 1999506 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 2980315 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 4611989 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 4890292 6641983 ~ 6642628 (+) True G103542
TU130500 other downstream 72204 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 214852 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 248135 11842129 ~ 11844089 (+) True G104435
TU130727 other downstream 472500 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 931366 12525360 ~ 12527031 (+) True G104694

Expression Profile