RNA id: TU130443


Basic Information

Item Value
RNA id TU130443
length 1413
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G104341
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11511223 ~ 11593619 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGATTGTAATCTGCCACTCGGTGATGAGGCTCAACGTTCTTACTACAAACctgaaaacaacattaaaaaaaaaaaaagaaatcatcagatgttttattttggtttgtttttgtacatcaCCTTCTCTGACCAGCACTACTGCCTGTAACATGGCCCCAGTGTCCCATTGGTTTGTGTTCTGAACGAGCCCTTAGGTACTTCAATGAAACTGTACatgaactaataataataagctcgATTAGACTTTTACATGATTTGGCTCACAAAACAGGTGGAGAAGTAATGAATGATAATCATGGAGACAGCACTGAACAGACTTTGGCAGACATCCCCCCCTTTACCCTCTcaagtacacacacagactttgATTACATATAAGAATAGTcgccaccatcatcatcattaaaaacatatgttcTGTTTTCAGGGAGATTAAGCACCTTCAAAGCCTCTGCCAATAGTGCAACTGAGAGGGTTTGGTTTACAGGGGAAGCTAAGCTGTAGTTTACAGTTAATAAtactcataataatattaataacaacaacaataataatagttctGCATAGGTAATCATCACGGtacaaacaaagtacaaaacaaaatagattaaGACTATgatcaataaaaaatatcttctttcaaatatattaagtAGGACTTTTAGGCTGGCCTAGCAAGAAGATCTTGAGTCAGGGGTCTTGGGGTCTTGATGCCCTGATACAGCTACCCCCTCTGTTGTTTTTAGGCACCTGTTTGTTGTAACGGGCTGTGCAAAGAAAATCTGACTCCCATTGCACAGCACTCTGCTATGCTCCAGGTGTGTAGCATGTTGGGGGTACAAGCCCAGGTCATATTGTTACCACACAGCCCTACACCAGAGCCATGACTATGAGCAGAAGTTCAAGCTTATTATTGATCTGCTGACGATgggtcagtgtttgtttttggtaagAAGCACTCAGTAGGACAGGGGCCCTGGCAGAGTTCTGCGGACAATTTGTGAAACCTTATACTAGAGCCACCTTGCTGTGCAATGGGAGTCCCGTTGGCTGGCCCCTATCGGTGGGTTCAGTCCAACTACCTTCCTAACAGAAAGAGCAATGCATGAGGGGGTTCAGCAACCTGGTGGAAGGCCAAGCGTTGTGTCTCTCTTCTCTAACAACGCACACAATCAGACCAATAAGGGAACTCAAACAATAAAAGCTCAGCGAAGTCACCTCCCTTGTCAAGCCAGCCAAGAGGGAAAGGCAAATGAACGCACCAACAAATGCAAGGAACGAACAAAgcgaatgaaaaaataacattcaattaaaaaaaaattaaacatgaaactCTGCGCCCGAGGAAAGCCAGATGagacctatttaaaaaaaagaagaaaaagaaaacatatatatttatatatataca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130411 lncRNA downstream 84998 11420749 ~ 11426225 (-) True G104319
TU130406 lncRNA downstream 91120 11416190 ~ 11420103 (-) True G104315
TU130354 lncRNA downstream 564949 10946001 ~ 10946274 (-) True G104278
TU130348 lncRNA downstream 787267 10723590 ~ 10723956 (-) True G104272
TU130156 lncRNA downstream 2098301 9410589 ~ 9412922 (-) True G104126
TU130492 lncRNA upstream 55386 11649005 ~ 11656833 (-) True G104376
TU130580 lncRNA upstream 69973 11663592 ~ 11697059 (-) True G104449
TU130673 lncRNA upstream 365619 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 383732 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 397210 11990829 ~ 11994339 (-) True AMCG00011140
AMCG00011104 mRNA downstream 76842 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011103 mRNA downstream 115476 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011092 mRNA downstream 1032075 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1757733 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011083 mRNA downstream 1761324 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011112 mRNA upstream 59383 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011114 mRNA upstream 71505 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011113 mRNA upstream 110470 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 207142 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011118 mRNA upstream 245641 11839260 ~ 11853897 (-) True AMCG00011118
TU130270 other downstream 1767438 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 1908482 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2275030 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2647557 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 401794 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 473846 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 732478 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 842252 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 954670 12548289 ~ 12548993 (-) True G104715

Expression Profile