RNA id: TU130492


Basic Information

Item Value
RNA id TU130492
length 1225
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G104376
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11649005 ~ 11656833 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaattattgtgcTTAACAGATTTGTCGATTGGtgtgtgtagggtgtaaatatgatcagATGGATTATGGAAAGAATCCAATTTGACTTTTACTCCAGAGACTGTGCTTAGTAAGTCAGCGAGTCTTGTGCTGGCTGATCCTGCCCCAGcatAAGTATCTGTGTTCCACTCAGAGTTGCAGTGTTAACATCTTATGAATTGGACTCTATAGCACCAGAACTGGGTCAGACTGGGAAACACCCCCCACCTGGCCTTGCAGGTCACGGGCCCCAGCAGAGacgacaaaaacacacagagggagAAAGTGAGGGATTGTGGTTTGGGTTTGTGTCTCATATTACCTGTAACACGAGGACATTTATACAGTTGTTAGATGGAAAACATAAATGACAGGACAGCAGaggaaaaagttaaaaaaaaaaaaaaaaaaacactcacatGCCTTGAATGGGATTCAGTAACTTCAGTACTTTTCAGTCCACCTTGAGCTCTCCATGAACATAACCAGGTCTAATCATTCAATTCATCGCCactactttaaaaaacaaaaatcttaaatttaGCCAAGTgcttttttcattcttgttttgtattattcactAAATCACAACCAACACATAATTAACATCAATTAATCAAAAGTAATTAGATTAAGTTAATGGAGAGGAAGTTAGAATAAAAAGTGGAATTGCAGTAAGCCGCCAGCCCTGGACAATATTTTACAGTACAGAACAGCAGGGTCCCCAGCGCCGGTCCTGGAGACAGACAATTCTTCAGGTTTAATAGGCATCTTCAATCAAGGGCTCAAGAAGTCCCTCCAGAATAGACCACCAGTGTCCAGGACCAGAGCATCCTGCCTCTCACACATCCAACCCCATTGCAAACACCATTttcttagaaaacaaaccaaccagcCATCCCACACTTTTAACtcctttaattacttaattggtcctGCTGCCAAAGATCGATCATTTTAGTGGAcaacttaaaacaaactgacaggAGCGGGGAGAAAGACAGGATACCCTACAGCTGGGAGTGATGGTGCCAGCTGCAGGAAAGggaagtgtgtgtttgcatgtgccTGTAGGAGGGGGGTGCTGGCAGAGTCGGGGTTCGAGAATTGAAAGGGAACGTTGTCGATGGTGCTCTCATTTTCgagagacaaaaatataaaggaaatgacaaaataaaaaatagtctGAGGTGACAACCTAGCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130445 lncRNA downstream 54663 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 55386 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 222780 11420749 ~ 11426225 (-) True G104319
TU130406 lncRNA downstream 228902 11416190 ~ 11420103 (-) True G104315
TU130354 lncRNA downstream 702731 10946001 ~ 10946274 (-) True G104278
TU130580 lncRNA upstream 6759 11663592 ~ 11697059 (-) True G104449
TU130673 lncRNA upstream 302405 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 320518 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 333996 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 382336 12039169 ~ 12039376 (-) True G104545
AMCG00011104 mRNA downstream 214624 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011103 mRNA downstream 253258 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011092 mRNA downstream 1169857 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1895515 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011083 mRNA downstream 1899106 9745248 ~ 9749899 (-) True AMCG00011083
AMCG00011114 mRNA upstream 8291 11665124 ~ 11694330 (-) True AMCG00011114
AMCG00011113 mRNA upstream 47256 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 143928 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011118 mRNA upstream 182427 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011117 mRNA upstream 198398 11855231 ~ 11860000 (-) True AMCG00011117
TU130270 other downstream 1905220 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2046264 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2412812 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2785339 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 338580 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 410632 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 669264 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 779038 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 891456 12548289 ~ 12548993 (-) True G104715

Expression Profile