RNA id: TU130558


Basic Information

Item Value
RNA id TU130558
length 1940
RNA type TUCP
GC content 0.45
exon number 2
gene id G104435
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11842129 ~ 11844089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTCAGCAGATCAGCTTTATTTCTATGTGCTGGATGTGCCTCAGTGTCccagcaggcagacagacaggcacacaaGCCCCTGCCCAGCACACAGCCTTAGAGAGCCAGGTCCACAGACCTGCCACACACAGCTATCAACAGCATTACATCCCCCGTGTGCAGCACCTGCTgtcacaaaaatacattcagagAGTCagttacagagagagacaaagtgagagacagggagaaGAGGAGACTGGTAGACAGTCAGTTAAATAGCTAGTCGGTATACCAGTCAGACAGGCAGTCAATGTCAGTCAGTCATCATCTCCTATGCCCAGTCAGACAGGGCAGTGTTTTTCTATCTCTCACTCTGCAGTATAACAATGCAATAGATTAGTTATGCAATTGGTAGTAGAAAAcgaacaaaacaattaacataaaacacatacatacacacaaacccaGTCCCCACATTATAAACACTCTCACAGTTGGAGAGAAACGGAGAGAGAGCTTCCACTATAAGTACACCTCTACCCAGATATTTTGACTTCAGAGGGTTGTTATATCGTACAGGTGAAATGGCATTGCTTTGTCCTCGAGTATTTCCATTATTAATAGTCAGCAAATCATGAGTGGAAGAactaatacagtaaataaatgtgttattctgGTTTAATTGTATCTCCTTTCttcaattacaataattattttctaaacttGTTTAAAAGATAGTGTAATAACACaggttaaatgaaaacatgtggGCTCAGTTTCATCACACAATcatttggtgtgtgtgtaatgcttagtaaaatgcaaaattcataaaatcagaaaatgcttttaattacacatccttaCAAATTGTTGTAATAAAAGATTtgggtattttagcaaataggagCATGGGCCACTTTATCACAATTTTTGCTTTACCACGTTATATCAGAATTTGCATTATATCGAGGTAGAGGTGTACCACCTGTGAGTAGAGGGCAGGGCCctgaaaagttaaaaatacacagtaaaaataaattcaccagggatgatgatgataataataacaaaagagATAAGCAGAAGGAGAAGTTCTAATAAACTCTGTGAGGAAAATTTAGAAATTAACTGTAgtaatattaacaacaataataataataataataataacacatgtaGAAGCAGTAGCTCAGTTTGCAGGTGCTTGGGTAAGGGGGGCTAGGAAAGTCTTCCTCCCCATCcctcacaatctctctctccctcaatacttgttgttattattattattattactacatttcttagcagattcCCTTATCCcaggcaacttacaattgttacaatatatcacattatttttacatacaattacccattgatacagctgggtttgtactggagcaatctaggtacagtacgtTGCTcatggtacaacagcagtgtcccgcACCTgtgattgaacccacaactctCTGCTTCAGAATCCAGAGCTTCTCTCTGTGTTCAGACATACAAGGCAATCTTGTCCGGGCAGTGCAGGTGGTGGTGAGTGGGGGTGGCAGAGGGCTGACATGTGGGTGTCGCAGAGTCCAGGGTGGCATGTCCAGTGGGGCGGGGGCTGTGAGGAGACCCCCCATCGTCGAAGCTGAGGTCAGCAAGGTCATCGGACTGCGTGTCGGAACTCTCCAGCTCACTGCGCAGACTTTCCGGCTGTGCTAGAGTGACGTCGCCGCACTGTCGCCGCGGTGTCTCCCCCGATGACAGtgatgcccccccacccccaagccCCCCCCTCCGTGAGCTGCAGTCCTGAGGCTCCTCCCCAGGGCCAGGCGCCGTGGTGACGGAGGGGGGGGGCGGGGCCAGATGCGAGGCCGGGAGCAGGTCatcctcactgccctcactggACAGTCGCAGGTGGCTGGGCTTGGTCTCAATGTCCACCTGAATCTCC

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130484 lncRNA upstream 191108 11644017 ~ 11651021 (+) True AMCG00011110
TU130425 lncRNA upstream 248135 11532920 ~ 11593994 (+) True G104326
TU130401 lncRNA upstream 422063 11418666 ~ 11420066 (+) True G104310
TU130396 lncRNA upstream 465044 11372554 ~ 11377085 (+) True G104307
TU130347 lncRNA upstream 1118239 10723550 ~ 10723890 (+) True G104271
TU130570 lncRNA downstream 321 11844410 ~ 11844623 (+) True G104443
TU130571 lncRNA downstream 597 11844686 ~ 11845805 (+) True G104444
TU130572 lncRNA downstream 1899 11845988 ~ 11846253 (+) True G104445
TU130632 lncRNA downstream 70405 11914494 ~ 11917031 (+) True G104479
TU130634 lncRNA downstream 73599 11917688 ~ 11918147 (+) True G104480
AMCG00011116 mRNA upstream 3100 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 31307 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 193166 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 199902 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 254923 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011122 mRNA downstream 99510 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011121 mRNA downstream 118309 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 142773 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 190208 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 200946 12045035 ~ 12050580 (+) True AMCG00011134
TU130563 other upstream 31433 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 170789 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1022706 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2308715 9530474 ~ 9533414 (+) False AMCG00011076
TU129898 other upstream 3289524 8548363 ~ 8552605 (+) True G103939
TU130727 other downstream 222405 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 681271 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 766040 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 1098291 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2775601 14619690 ~ 14620534 (+) True G105139

Expression Profile