RNA id: TU130571



Basic Information


Item Value
RNA id TU130571
length 1120
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G104444
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11844686 ~ 11845805 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGCTGTACTTGCCACCCCCAGTGCCCAAGGCTCCCCCGGCCAGCGTGTTGAACCTGGGCGTATCTCCCAGCCCCGCCCCGGCTACGCCCTCGCTGGGCGAGGTTGTGCTGAGGGCAGAGGTCACACCCTCCAGGCTGCTCTCCCCCAGACTGGGCCGCTTCAATGCACGCCATGCATCTGCCACTGagagaagagacagaaagagagagagagagggagagggagatggagagggggaAGGGTAAGAAAGAGAAGGGAatagggagagaaagagggcaaagagagaggggggagggagagatggggagggggagggatacaattaatagattaattgatatatatatagatatatagatatatagatatatatatacactttttttagGGTTTTAAGTCCCAGAGTAAAAACTATTTGAgacagtgagggagagggagaaacaccataagagggagagggagagtgacagtgagggaaagggagaaataCCATGAATGAGAGACGGCGGGTGTGTTCTTCAGATAGTTCAGTGAGGTCACAGAAGGGGGGTGGCACATGGCTCACCTGTGATTGGTCCGTCATCCTCATCAAAGTCGATCTTGACGCCGCGACCTTTGGCCCTGCTGACTCCGCAGCCCCCACCACGGCACAGCGACACGGGCACCACACCGTACACATACGCCAGCATAATAGGCACGCCGATCCCTGGCAACCAtaccacacaaaaacaacaacacaagtcaGTGCTGCAATGTAGAAGTAACACCACACAACAGTGAGGGTAGTAGCAGTACAGTATGCATACAGTAGCAGGTTAGTACTTGTACCGTAACAGTGTAGAAAGTTGAATAGGGTGGTATAGTAGACGTGCGGAAATAGTACAGTAGCAGGGCAGTACTGGTATAGTAACAGTGTGGTAATAGTAATAGCAGAGTAGCAACAGAACAGTCACATGGTAGCAGCAGTGTGGCATCAGTGCAGTGTGGCAGCGATGGCTCCTCACCCACGCTTACGGCAGCGATGACGGGTGCGGTTAGGATGGACAGGGCCACGCCCCCCGTGATGGCCAGGTTCCGCCGCGGCCTGGACACCTTCTTACTGTCATAGTGACTGTGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130570 lncRNA upstream 63 11844410 ~ 11844623 (+) True G104443
TU130484 lncRNA upstream 193665 11644017 ~ 11651021 (+) True AMCG00011110
TU130425 lncRNA upstream 250692 11532920 ~ 11593994 (+) True G104326
TU130401 lncRNA upstream 424620 11418666 ~ 11420066 (+) True G104310
TU130396 lncRNA upstream 467601 11372554 ~ 11377085 (+) True G104307
TU130572 lncRNA downstream 183 11845988 ~ 11846253 (+) True G104445
TU130632 lncRNA downstream 68689 11914494 ~ 11917031 (+) True G104479
TU130634 lncRNA downstream 71883 11917688 ~ 11918147 (+) True G104480
TU130639 lncRNA downstream 74069 11919874 ~ 11921197 (+) True G104483
TU130645 lncRNA downstream 83408 11929213 ~ 11930014 (+) True G104488
AMCG00011116 mRNA upstream 5657 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 33864 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 195723 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 202459 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 257480 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011122 mRNA downstream 97794 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011121 mRNA downstream 116593 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 141057 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 188492 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 199230 12045035 ~ 12050580 (+) True AMCG00011134
TU130558 other upstream 597 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 33990 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 173346 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1025263 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2311272 9530474 ~ 9533414 (+) False AMCG00011076
TU130727 other downstream 220689 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 679555 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 764324 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 1096575 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2773885 14619690 ~ 14620534 (+) True G105139

Expression Profile