RNA id: TU130580


Basic Information

Item Value
RNA id TU130580
length 778
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G104449
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11663592 ~ 11697059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaacaggaaaaagcagaaacttatttattttgggagtATTGTATCACTGGCCAGAGTGCATTATAATAAATTtggatttttgttattattattattattattattattattattattattattattattattattgtatgattCTTTGTGAggatctctctcgctctcttgtTAGTGCGTCTCTTTCTGGATTGACGGGGgggcgagggagagggagagggtgaatGAGTTactgacagacagaaagagagcaGATTATGGAGCGGCAGAaaatagagagagtgagaaagagtgGCACATCAGCCCCAGTCTCCCTTTTTCCCCTCACCCCTCTCCCTCTACACTATACTGGGCCATCTGACTCACCTGATGCTACAGACTGGGTCCCCTGCACTATACTACAGCACTGAGTACAGGCAATCCAGTCTGGGCAAACCAGAGCTGAACTGACGTCTGGGTCAATtcgattttatttatttatcttctgaGCCGTGCCCCCTCACCTGAGCCTGCCTGACTGTCCTTTTggaagggagggggggcaggcAGTGTGTAGTTTGCTTCTTTTGTTCCTCGCTGGggaaggagagaagagaggatGTGCCGTCTGCTTGTGTTAGAGACTGGCAGGCACACTGGAGTAATGGTTGTCAGGGGACGATaaagattatgattattaaaaatgaataatggtaaataaaatggattttaaacaatctttttttctgttctctttttgtattaaaatatcgCTTGCAGTAAAAAACTACGAAA

Function

GO:

id name namespace
GO:0046530 photoreceptor cell differentiation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130492 lncRNA downstream 6759 11649005 ~ 11656833 (-) True G104376
TU130445 lncRNA downstream 69250 11587058 ~ 11594342 (-) True G104342
TU130443 lncRNA downstream 69973 11511223 ~ 11593619 (-) True G104341
TU130411 lncRNA downstream 237367 11420749 ~ 11426225 (-) True G104319
TU130406 lncRNA downstream 243489 11416190 ~ 11420103 (-) True G104315
TU130673 lncRNA upstream 262179 11959238 ~ 11971002 (-) True AMCG00011125
TU130682 lncRNA upstream 280292 11977351 ~ 11978288 (-) True G104513
TU130711 lncRNA upstream 293770 11990829 ~ 11994339 (-) True AMCG00011140
TU130718 lncRNA upstream 342110 12039169 ~ 12039376 (-) True G104545
TU130755 lncRNA upstream 379669 12076728 ~ 12144122 (-) True G104568
AMCG00011112 mRNA downstream 2293 11653002 ~ 11661299 (-) True AMCG00011112
AMCG00011104 mRNA downstream 229211 11431706 ~ 11434381 (-) True AMCG00011104
AMCG00011103 mRNA downstream 267845 11369700 ~ 11395747 (-) True AMCG00011103
AMCG00011092 mRNA downstream 1184444 10459562 ~ 10479148 (-) True AMCG00011092
AMCG00011085 mRNA downstream 1910102 9752696 ~ 9753490 (-) True AMCG00011085
AMCG00011113 mRNA upstream 7030 11704089 ~ 11767942 (-) True AMCG00011113
AMCG00011119 mRNA upstream 103702 11800761 ~ 11805757 (-) True AMCG00011119
AMCG00011118 mRNA upstream 142201 11839260 ~ 11853897 (-) True AMCG00011118
AMCG00011117 mRNA upstream 158172 11855231 ~ 11860000 (-) True AMCG00011117
AMCG00011124 mRNA upstream 175545 11872604 ~ 11891098 (-) True AMCG00011124
TU130270 other downstream 1919807 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2060851 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2427399 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 2799926 8819551 ~ 8863666 (-) False AMCG00011051
TU130712 other upstream 298354 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 370406 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 629038 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 738812 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 851230 12548289 ~ 12548993 (-) True G104715

Expression Profile