RNA id: TU130628


Basic Information

Item Value
RNA id TU130628
length 864
lncRNA type inter_gene
GC content 0.56
exon number 4
gene id G104477
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11948240 ~ 11949712 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTtggcttttgtattttttttattgtcattttgcattttttacaaACTGAGACAGCGGCGGAGTCTGCAGCATCCTTCTCACTTGCCCGGGAGGATGATGCCATCCTTCTGCTGGAACCAGCGCATGGCCTCCTCCTTGCTGATGCGGTGCTTGGCGCCAATACGACCAGTCTTCTGCTTTTTGTCTGCAATGCTGAACCCGGGCCTGCCCAGAACACGTAGAAGTCCAGGCCGTAGATACCGATGCTGGGGTCATACTTGATGCCCAGGTCGATGTGCTCCTGGATGCCAAAGCCGAAGTTGCCCGTGTCCGAGAAGTTGTTCTTCCTCAGCTCGTACTCGCGCACCTGGACAGGCAGCCAGGAGACAGGTTAGACCACTGCATGGCACAGGCCTCCACACCTAATGACATGCACTCCAAGGGGCTGCCCCATCTCCTGCCATTTCCATTTTAGTTGCATTTCCTTCTCTAGCCCCTCGGTTTAGTCTCAGTCTCCCTCTGCTCATTCACCTACAGCACAGGAAATCCAGCAGCCCCTCCACCAGCTAGACAAGATCAGACTGTTAAGGCCCCCTCCCCTGGCCCTGCAGTAATTCCCCACTCACCTTGAGGCCCTTCTCCAGGATCTCCTCGGCTTTGGCACCACGTACGGTGCAGTGCACTGCGATCTTCTCATTCCTGCGGATCCCGAATGAACGCACAGTGTAACGGGCTTGGAGAAGACGGGCGTCTGTCCGGTCAGCTGCTCCAGCACCTTGGCAGCACGGGTCAGCCTGTCACCGCTCTCACCCACACAGATGTTCAGGCACAGCTTGCGGATCCGCAGCTCACGCATTGGGTTCTCCTTCTTCTCACCCTGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130646 lncRNA upstream 15954 11930208 ~ 11932286 (+) True G104489
TU130645 lncRNA upstream 18226 11929213 ~ 11930014 (+) True G104488
TU130639 lncRNA upstream 27043 11919874 ~ 11921197 (+) True G104483
TU130634 lncRNA upstream 30093 11917688 ~ 11918147 (+) True G104480
TU130632 lncRNA upstream 31209 11914494 ~ 11917031 (+) True G104479
TU130681 lncRNA downstream 27524 11977236 ~ 11978365 (+) True G104512
TU130734 lncRNA downstream 117739 12067451 ~ 12140465 (+) False AMCG00011141
TU130787 lncRNA downstream 201653 12151365 ~ 12151633 (+) True G104596
TU130798 lncRNA downstream 300547 12250259 ~ 12254820 (+) True G104603
TU130804 lncRNA downstream 309900 12259612 ~ 12259861 (+) True G104609
AMCG00011122 mRNA upstream 2239 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011116 mRNA upstream 109211 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 137418 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 299277 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 306013 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011121 mRNA downstream 12686 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 37150 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 84585 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 95323 12045035 ~ 12050580 (+) True AMCG00011134
AMCG00011141 mRNA downstream 141607 12091319 ~ 12140338 (+) True AMCG00011141
TU130558 other upstream 104151 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 137544 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 276900 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1128817 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2414826 9530474 ~ 9533414 (+) False AMCG00011076
TU130727 other downstream 116782 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 575648 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 660417 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 992668 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2669978 14619690 ~ 14620534 (+) True G105139

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU196169 True 2597 lncRNA 0.35 1 CM030142.1 14489280 ~ 14491876 (+)
tiger barb (Puntius tetrazona) TU196169 True 658 TUCP 0.45 2 NC_056717.1 13507664 ~ 13508453 (-)