RNA id: TU130639



Basic Information


Item Value
RNA id TU130639
length 1127
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G104483
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11919874 ~ 11921197 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGTGGGCAAGAGCTGTGCATCAGTCCAGGGAAGGTGGAGAAGGTAACCTTGTGTGGGGGCAGCAGGGTGCGCAGCTTCTCTGCAGTCATCTCCCCGATCTGGACCGGGATCATGGGGTCCATCTCCCCGTGGCACTGCAGCACCGCCATGTCCTGGTTGGCATTGCCACTGGCCGCCTGGGGAAGCTCCTGTGCAGAGGCAGCCAACAGCTCAGCGCCACGACTCCAGCCAGCCTGTGTTGACTGGTGAGAgcagtgtagagagagagagcaccacCCTGGGAGACCCCCCGAGCAGCACTCTGTGAGAGGGGATCCCATTCTTCACCTCATGGTCAATGATGGCTTTAActgcaggggagagagagagagggagagagcagacATGAAAATGTTCTCTCTGCACTAAAGGACgttttttcaaacattaaaaaaatatatatatctttcaagTTACATTACAACCCTCGAACGGACAACACAAGACACAATCCCAACTCTAAAACAACATAGAATTTCCAGCagaaatttaaaagaaaagcttCATCAACAGGAGTGGGAAAGAGCTGCTCAGAATTTATAAGGGCCTGCATGTGTACATAGTCAACAGGAGGCCAGAGAGGACTCCGGGAAACTATACCTACAGATGTATTCTAGGGTGCAGTGGGGTGGACTACACCCTCACTGACCTCGACCCCCACAGCATTAACGTCTACATAGTCAGACCACAGTCAGCACTATCAGACCAAAGAGTCCTCCATATATACATAGGTGCCCTAAAAGACACACAGCCTGTCACCTCCCCATACCTGTCCTGCTACAAATGGACAGCAAAGAGCAGAGACACAAGAAACACTAGTCACTACTGTTCAGGAGTATCAATGCTGGCACGTCAATGTCGTGCAAGGGTGTCAGTGCCATGCAGGGGTGTCAGTGCTGGAGCGTCAGTGCTGTGCAGGAGCGTTGGTCTCACTGTTCTCTGCTGCCCTCTTGATTCCAGCCTCGTCCTCCGGAGACTCGGGGCTCAAACCCATCAGGTCAAACctgtaatacacacactgttacacacacagatcactacacacactgttacacacagatggacagaaaTACAGACACTCACCAAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130634 lncRNA upstream 1727 11917688 ~ 11918147 (+) True G104480
TU130632 lncRNA upstream 2843 11914494 ~ 11917031 (+) True G104479
TU130572 lncRNA upstream 73621 11845988 ~ 11846253 (+) True G104445
TU130571 lncRNA upstream 74069 11844686 ~ 11845805 (+) True G104444
TU130570 lncRNA upstream 75251 11844410 ~ 11844623 (+) True G104443
TU130645 lncRNA downstream 8016 11929213 ~ 11930014 (+) True G104488
TU130646 lncRNA downstream 9011 11930208 ~ 11932286 (+) True G104489
TU130628 lncRNA downstream 27043 11948240 ~ 11949712 (+) True G104477
TU130681 lncRNA downstream 56039 11977236 ~ 11978365 (+) True G104512
TU130734 lncRNA downstream 146254 12067451 ~ 12140465 (+) False AMCG00011141
AMCG00011116 mRNA upstream 80845 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 109052 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 270911 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 277647 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 332668 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011122 mRNA downstream 22402 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011121 mRNA downstream 41201 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 65665 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 113100 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 123838 12045035 ~ 12050580 (+) True AMCG00011134
TU130558 other upstream 75785 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 109178 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 248534 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1100451 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2386460 9530474 ~ 9533414 (+) False AMCG00011076
TU130727 other downstream 145297 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 604163 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 688932 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 1021183 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2698493 14619690 ~ 14620534 (+) True G105139

Expression Profile