RNA id: TU130646


Basic Information

Item Value
RNA id TU130646
length 2059
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G104489
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 11930208 ~ 11932286 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaggtcaataaaacatttaataaaatctattaaaattactaatttgatcCACCCATCTGAGAGTCAGTCGAGGGCGTTCCTGATTCCAGTGCTGAAACACATAGAGAAAGGCTAAGGCAGAGCAGAGcagtccctctctgtctctgcctcttcCCTCCCATTCCTCCCTCGTCCCCTGttcactccctctcccttcccATTCCCCTCCCGTTCCTtccccagccccccagccccaccACCTCTGTTCACACACTCTCAttctcacacactctctgtcTCATACACTCTCATCTCATACACTCTCattctcaccctctctctcttcccaccAGCACCAAGAGATCCCAGGTTTGTTCCCTTTCCTGTCAGTACAGTGACTCAGCACACAGCAAGAGAAGTAGGGgaagggaggtgggggggaggtctattgtgtgtgtgtgtgtgtgtgtgtgtattactgcAACTGTGTGTGTCTACATAGGACTGTCTGCTTCTGcctcaatgtgtgtgtgtgtgtgtgtgtgttacATAGTATGATAGTGAAGAGGAACAGCCCTGATCCTGGAAAGCCTCCATCCAGCATAATGAACAGCAAAGTTTACAGATCAGATCAAGTGCCTGTCCATCTatcggtctgtctgtctgtctgtctgtctgcctacCTGCAGTGTGTAGTGAACAGTGGACAGTGTGTCTGCAGTGTACAACTATTTCTTGTTTAACCCTCTGAGGACGATTTAAGAGGATCCACCCTAAATTcgggcatcaattacaaagtattaattatctgagaaatgtttttttagctgcatagctgagattctgctgaaaaatACCATGTGCGGTTTGTGTACGTCGCATACTTCCTGGTTCTAGAAATTCAATGCACAATGCAGCACATGGGTCTGGAATtgcccaatggagaggatgttacTGTGTGTCATGTCCCATGGAGATCTGCCTTTACTAGCCAATCAAAAAAACCTGTCTCAGGCAGCTGGAATAGATCAGCTGACAAGTGTCCAGACCGAGCAGTGACAGAGAGGTGGGAGAGCCAgcagagtgagagggagaggctTATACAATTCAGCTCATAACTCAGCTATTCTAGATGCTACTGCTATATATGAGatatctatggattcagaacagcttcagctaagcatgtattatgtacttataatacagtatatattatataagtggaaaatgtgcaataaagtaaaaaaagaaacagaactagatttttattttccagcaaaggaaaacagaagctgatcCAGATTGTAaggtcagcagaatatataacaagaccccctggcatgccaggtgcccctctgccacttcctggagatgcccagctttgctcagtgACATGTCTGAGGGATCTGAATAATTCAGGGAAAACAGAATTTCACTGTTTGCCTGGGGCAGTTTGCaaaaaaggtgcattatttcagtgttatgtatatagtttattgaaagacaatgtatatttcaatacctaaggctttgaagagcatgttctaagtgtcaaaacTGTTCACTATTACTGTGTGGGGTGTgcagtcaataataataaaaaaaaaaaaagaaattccaTTTCTCATTTaactttattgcacattgttcACTCAAATACTAtcttataagtacattatacatgaaGAATGCATTTAGCAGAGGTTGTTCtgaaaaatagatacatattgtttatcagctagAATGTAAAAGTGGTACAAACAAGTATAAATTGTCTCAGTCCTCTGAGGGTTAAGCTTGTCTGTGCATGTGAGAGGGTGTGAGAGGGCGTGAGAGGGCCtaagagggtgtgtgtgtgtgtgtgtgtgtttaggggCTGCTGTCTCTTAGTCTCTCAGCCaaaccacccccacccctctctccctgggggggggggcagggtgcAGGATGAGGGGGAGGGGCTACAATCTCACTTCTTTCTCTCCTTTCGCTCCAgttctccatctctccatctacCGTCTGGAAAATCTGTTCTTGAAAGCTTTGATAGTCTTGGCCATCATTGGGGCAAtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130645 lncRNA upstream 194 11929213 ~ 11930014 (+) True G104488
TU130639 lncRNA upstream 9011 11919874 ~ 11921197 (+) True G104483
TU130634 lncRNA upstream 12061 11917688 ~ 11918147 (+) True G104480
TU130632 lncRNA upstream 13177 11914494 ~ 11917031 (+) True G104479
TU130572 lncRNA upstream 83955 11845988 ~ 11846253 (+) True G104445
TU130628 lncRNA downstream 15954 11948240 ~ 11949712 (+) True G104477
TU130681 lncRNA downstream 44950 11977236 ~ 11978365 (+) True G104512
TU130734 lncRNA downstream 135165 12067451 ~ 12140465 (+) False AMCG00011141
TU130787 lncRNA downstream 219079 12151365 ~ 12151633 (+) True G104596
TU130798 lncRNA downstream 317973 12250259 ~ 12254820 (+) True G104603
AMCG00011116 mRNA upstream 91179 11833844 ~ 11839029 (+) True AMCG00011116
AMCG00011115 mRNA upstream 119386 11808908 ~ 11810822 (+) True AMCG00011115
AMCG00011110 mRNA upstream 281245 11644142 ~ 11648963 (+) False AMCG00011110
AMCG00011111 mRNA upstream 287981 11638002 ~ 11642227 (+) True AMCG00011111
AMCG00011108 mRNA upstream 343002 11574540 ~ 11587206 (+) True AMCG00011108
AMCG00011122 mRNA downstream 11313 11943599 ~ 11946001 (+) True AMCG00011122
AMCG00011121 mRNA downstream 30112 11962398 ~ 11966995 (+) True AMCG00011121
AMCG00011120 mRNA downstream 54576 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011133 mRNA downstream 102011 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011134 mRNA downstream 112749 12045035 ~ 12050580 (+) True AMCG00011134
TU130558 other upstream 86119 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 119512 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 258868 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1110785 10818688 ~ 10819423 (+) True G104273
TU130204 other upstream 2396794 9530474 ~ 9533414 (+) False AMCG00011076
TU130727 other downstream 134208 12066494 ~ 12067337 (+) True G104550
TU130924 other downstream 593074 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 677843 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 1010094 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2687404 14619690 ~ 14620534 (+) True G105139

Expression Profile