RNA id: TU130755


Basic Information

Item Value
RNA id TU130755
length 392
lncRNA type sense_over
GC content 0.54
exon number 2
gene id G104568
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12076728 ~ 12144122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAATTCAGCACTGCTGTCTGGAGCACAGGGAAAATCGCACTGCAACACGCTGTTGGACACCACACAACATTGCTGGTGCAATACCCGCTCACTGCAGTGTACCTGATTGGTGGTCTCAGTGCGTAGTGCCCGTCCCTCTTGCCGTATTTGATGCGATATACTTCGCTGGTTCTCAGCGGTGCTGGAGAGTAGTTGGCTGTTGGTCTGCCAGTCAGGCACGCTGAAGCGCTGTCCGGGCTTTACACTCAGAGTGGCCATGTGGGTTGCAGCAGGACAGTGTTATGGACCCAGAGTGCCGTATTTCTGCTACAAACAGCACACACCTGTAACTCAGCAACCGCTCTCTCATCAGTCTGTGAACAATCACTCCCCCAATCTCCTCAGTGCgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130718 lncRNA downstream 37352 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 82389 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 98440 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 105726 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 379669 11663592 ~ 11697059 (-) True G104449
TU130789 lncRNA upstream 12320 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 230945 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 258242 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 285843 12429965 ~ 12493101 (-) True G104680
TU130932 lncRNA upstream 379715 12523837 ~ 12524358 (-) True G104697
AMCG00011135 mRNA downstream 7653 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 17103 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 43329 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 67775 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011140 mRNA downstream 80794 11992239 ~ 11995934 (-) False AMCG00011140
AMCG00011150 mRNA upstream 121385 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 156663 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 244141 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 283871 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 353225 12497347 ~ 12499099 (-) True AMCG00011159
TU130749 other downstream 7649 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 78942 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2332943 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2473987 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2840535 9234411 ~ 9236193 (-) False AMCG00011058
TU130831 other upstream 181975 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 291749 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 404167 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 490734 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 798269 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile