RNA id: TU130781


Basic Information

Item Value
RNA id TU130781
length 5693
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G104591
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12135968 ~ 12142015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AACACTAAAGGCAATGAAACTAaaagaatataataaaataaagacgtTAAAAAAGACCTGTTGGTACAACAGAGAGTCCTTGcgatgtacagagagagaaggaacaGTCTCCCAGCAGGGCCGCCGCACAGTGCCCCCTGCTCTGCCTCCCCCCTCGGAGACAGCACCTATAAACCACCAAGCCCAGAGGAGACAATACCAtgctttggtttattattattattattattattattattaataattggttctcctttatatttttaaatattttcaccaGTTGAGTGAAAGTCAGAGGCTTGATGACACAGGAGCCCATGTAGGCCACTCTGGCATGCTGAGCTCAAATGGTGCCCTGGGGCTGGGGCCGCAATGAGGGCAGGAGAGGTGGCTCTGGGACTCCAGGCTCCCTTCAGCAAGTCAGTCGCACTTCCTCGGTCAGTTATAAACCAAGGGCTGTGGGTAATAAACCAACATCAAAATATGGAACCAGATAAACAATGTCTGAGACAGAGACTCACAGGCCGTGAGAATGAGGCTTCACTACAGGTTGGCTCAGGGATACACAGGGACCAGGTCATCAAGTCGAACTGGAGTACCAGAGCAGACAGCCGTGTACCCTGGGCTGCTCTCACCCTGTTACTGCCTGGGTTGGGCTGGCTGGGTGCCAATGGGCAGTCAGAGACTCCagctgggggtggggtgggtgagCTGGAGGAACAGTAATCCAATTGCTCAGTCTGTGTGAGACTCTGAGCTGTGTGAGAAGCAGAGCCTCCTCTCTATAGATCAGCATTTCCAAGCCCAGTCTGCTCCAGCTGATCCCAGGGAGGGAACTGTTGGACAGTGAGGGGACAGCTCTATGCCTTTTATGTCAGTCAGTATGAAGGGAGCCTAGGACTAATAGATTAGGAATatcaaactaaataattataatattaataataaaatatgtagtcACATTTGGTGGGCCTGTTGATTTGGTTCAAACTGAGCTTGCAGCCCAAAGTCAGGCTCCCCCTCTGCGGTCAATGACAGGAGGACAGGTACCCATGAAATCCAGGAAGAGGAATATTAGGACAGTGCTCAAGACAACACTATCCTCATAATACAGGCACAGGTCTCAAAAGTATATAAATCCTAGCCACGAATTCTTAAGGAGTAAGAAAGCCAACCTCGGAGCCCTGGGACTGTGCTGGGCTTGGCAGTTAAAGGGTTAATTGTATACACAGACGGAGTCTAACGAGCTGGGTTAGTGGTTAGAGGAAGGGACAACCCCGCCGCGGGTCAGTGAACTCTCGGCCACCATTGCTCTGGTTATAACTCACAGACACTACAGGCTGAGGCTCACAATGGAGTGAGAGACTGGCgaccaacacaaacacagcccgAGCGTTCCACTGAGCCCTCCCCACTCCGCCAAACCCTGGTGGCGAAtctgcagcacacagacagacatttgcaataaatacacagagcagATCAAAACacgtgaaacaaaacaaaaataaaatatgacgACAAAATAAAGGCTCATCTTAGGACAAAATCCAAAGTCAGAAAAGTGTTAAGACAAGAGATCTTCTCATTATAATTCTAAAGTAGTTAAGTATATTTAATCAGGCATTATCAAGCGCATTATACTGTATCCAAAGCAATATTTACTGTTCATTATTCAGTACAATATGCAGCATACCAAGGTAACTGAGGTGCAGTGTTTCCAAATCTAGAGTATCCTTCAGGGACCTGGGGGCACTCCCCTGACACAGCATGTCTGGCACTGCTGCACAGGACCTTGTGTAGGCCAATGGAGTCTTTACCACCTACCACTTCCCTGCCTAAGCCTAAGTCTGCTCCACCCCGCTCACAGCCACACTGCTCTGCGCTGCAtgacctctctccctctctccctctcagtgcAGCAGTGCTGTGGTTCAGTGCTCAGGGCAGCTGTGTCAGGCGAGTTTCCGTCCAATCCCCCACCACTGTCCTCCAGAGTCTCTTGGTCCTAACTGCCGTGACAGAACTAACCCATACTGTCATTTCTTGGCATTTATTATTAGCACTatgttaatatacatatatatagatatagatgtatatacatataaatatatctatatctatatgtataggacatgtttctatgtgtgtgtgtttgtattcgCATGTATGCGTCTAAGTACAGGTAGGTATTTCGCCTTTCAACATTTGGaaaaatttgatttatattcaaGGTCTACAGCACCATCTTCAGGAAAGGCACTTTCTGTGGACGACTCTGCCCAGGCAAGCCCTCAGACACATTGTGCACATTGAGCGCTGAGTCCTGAGCCCCCCTGGACAGAGCCCTGGTCCTCCAGTCACTTCCTGGGCAGTTTCTGGGGCCCAGCTGATGGTGAAACTGTAGCACTGTGTCCTCCAAGTGGGCTCAGGGCTGGAGTTTCATCACCCACCCTCCCCCACTCCTGCAAAAGCAGCCACACGCAACCCCCATGTTACATTGTCCGCTGCACATGTACATGGCTCGTGCAAACACTTTGCCAAtgcccaccaccaccacctctccCCGAAACCCATGATCGACCGACCGGATATAGAAAGTAGAGAGCACAGCCCCACACAGCCCGGCCGGCTGAGCACCTCCCTCACCACACACAGGTCTGAGTAGCGCTGTCGAGGAGGGGCGGGGGTGGTGCAGACCCCCACCACCAGTCTCATTGAGGCTGTCAGAAACCCAGCCAGAGAGCTTCCCCTCCCACAGCCCACTTCTCTAAGGAGCAGCAGGGTGACCAGCCCAACCTTGTTGTGCACAGCCTAGAGACGAGCTCAGCACCGGCCGCACACACAGGCCCAGAATCGGGCCCCGAGATGGGCTCAGTGCCAGCCTCACACAAAGGCCCAGAACCAGGCCCAGACAAGCTCTGCAGGACAGAGCCAGAGAGTGACATGGGGCTCAGTATGCCCACACCCAGCACCACAGGAACACACCGGGCCACACAGCTCCCTCTGCCACCAGCAACACACATATCTCTACTCCcaccaaaacattaaaacagtctattgcattatttaaattttatattattttagatcTGTTAGCAAAAATAAGTGGTGTGCattacattatgtaaaatatacaaatatactcCACTCTGGTTAAAAAGGCTTTCTACAGTCCACTACAATGAGAGGTCTGCTCAGCTGTTCCAGTTCAACGGCCCCGCCCCTGGGGCAGTCTGGGAAAGCAGTCCCGCCCCTTGTTGCCAAAACAACCTATCCTGTCACGAACTTCGCAGCCAGTTCTGGTCAGCGCTGTGCAGTAGGGAGTGGAGTGATTCCCTGTACCTTAAGAAAGATTCTCACTGGCATCTTATCTCTAATATAACGttaaacccccccaccccccaaccccatgAGGTCTGCCTTCTGTTTAACAGAAGAGGTGCACCACCCTTGTGCAGAGGctcctcccatctctctctctctctctacctccttctctgcctccctctgccAGGGACAGGGCGCCCACACCTCGTAGCACCAGGCCTGTGTTTAGTCTGACACTCACTTCTTTTAGTGCAGCACATTGTTTCACTCTTGTGTTCTGTATACATGAACacgtgtatatatgtatgtatatgtcgatatatgtatatgtgtatacgTAATAGCAGCTAAATCAGTTTCTCGTGGCTGTGCAGAATGCCTCTGTTATCCAACAGGAGAAGCGCTgtctcacagacacagacacagcaccATACACAGCACCATACACACAACCATGcactcacacattcacacacacacactgctggtGTCAGAGAAGCAGAGAGTCAGAGTGTCAGAGAATGTGAAGAGTGAGAGGCAGGGTGGCAGGGCTGGACAGGCACAATGCCCTTctgcaaacataaaaaaataactctgCAGTATGATGTTCAGTCAGTGCAAAttgaacacaattaaaaaataaatcaaataaaatcaaaaagagCTCTGCCTTCCTGTCGCTGGCTCGGCCCAGCTAATAATCTGCACGATCTGTTCTGAAGGTCTTTTTCACAttcatgacaaaaaaaagatagaaagaGAATACATACAGAGAGGTCCCCCAGCCCTACTGTTGCCTCTGCTCGGGTTCAAATACCTCAGATTCTCATAAGGGGAGGAAGAGACGTCCCTTCACCCTTGACACCCCTGCTCTCTGCCCCACCAGGCACTCATCAATCTCTCAGCATAGGCACAACAGCAAGGCCCCCACAGCGCTGCTGATACACCCGGTCCTGCACTGTGCTTCCCTTCCTAACCCTGTCTGCACATACACTCCCCCCAAGGAGAAACATCCACAGCCAATCAGGGCTCACATGCTGACAGAGACACCCAATGAGAGCACAGCCTGCAGGGCGTGGCTCCTGCTTAATGTCTTATTGCACTAAAGGATAGCAACACCATGACCTGTCAGTTTTCAGCAGGCAGCGCCGCCACCGCAACCACACTCTCACACAGCAACAGGAACTACAACTAACAGAGACGCAGCACTTCTGTCTCCactaatattaaattaattaggctTAATTACTCtaataaataggaaaaaaaactagggaaacaaaactattaaaataaaataaaaacaagaaaggctaaaatgtcaaacatttaaaaacaaaacaatcacattgCAGAGTTCTGAAGGAAAGCTTGCAGGCCACAGGCAGCCCAAGCCCAGCGGCACCAGCCCCTCCTGCCTGGGAGGCACCTGGGAGGCCTGCTTAAGATTCTCCAGTCTTGCATTCCCAATGCAGAAAGGCTTCGGTGGCTATTGAAGAGCACTTTCACCTTGTTGCCTGTGGGTGGCACTGTGCTCACAATAATGATAATTCTTGTGGAATTGAAGAGTGCAGAATGCAGCTTCACTGACACTCTCAGGGTAATAAGTCACCATTGGCTACAAAACCGGACGGAAAAGAACAATGAAACTGGTGTTTGGGGCTGGGGGGGCAGACTGagcagagtccacacacacattgatatacactcacacacgatcacacacacatacacacatatgtatgtgcgcacacacatacacaatcacacaccctttaaaacacacactgtcaaGCACTCTCACAGTGAGGCTGTGGGGATCCAGTTGCTGGTGGCCAAACAATGCCAGCCAGAGCTCCCTGTCTGATGAGGAATTTACAGAGCTGCAGCCACACTGACACGGCACAGAGAACTCCACTCAGCCCTCCCCCGGCCCTGCCAACGCATCCACAACACAAGCGTGTTTCATTCTTCTTTCATTTTccgctttgttttttttcatctttgaaaagataaattaaaagtGCTGCCGTAACACGGGAGGTAAAGGCCTCgtagggacagagacagacagagagacagacagggggCAGGGGAGGGCTGTATGCGGCTGGCTGGTTTCGTATTGCATAAGAGTGCCATGTTCCTTGTCAAAAGCAGCAGCGCATCCTGTGGCCAGCCCAGGGGCCCTTCCATCTGCACAGTGTCGGTACGGATTCGTGGGAAGGTGCACCCCTTAAACTGATCCCCTGGGAAACGCAGGCTGTGTGTGGCTGAGGAAGGGGTCTTTCAGGCGAAGTACATGGTGCGCAGGGTGTCATGGTGAATCTGCACGGCCTTGGCCAGGGCCTGGGGGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130718 lncRNA downstream 96592 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 141629 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 157680 11977351 ~ 11978288 (-) True G104513
TU130673 lncRNA downstream 164966 11959238 ~ 11971002 (-) True AMCG00011125
TU130580 lncRNA downstream 438909 11663592 ~ 11697059 (-) True G104449
TU130789 lncRNA upstream 14427 12156442 ~ 12156731 (-) True G104598
TU130874 lncRNA upstream 233052 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 260349 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 287950 12429965 ~ 12493101 (-) True G104680
TU130932 lncRNA upstream 381822 12523837 ~ 12524358 (-) True G104697
AMCG00011136 mRNA downstream 50540 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011135 mRNA downstream 66893 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 76343 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 102569 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 127015 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011150 mRNA upstream 123492 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 158770 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 246248 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 285978 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 355332 12497347 ~ 12499099 (-) True AMCG00011159
TU130749 other downstream 66889 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 138182 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2392183 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2533227 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2899775 9234411 ~ 9236193 (-) False AMCG00011058
TU130831 other upstream 184082 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 293856 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 406274 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 492841 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 800376 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU102356 False 2313 lncRNA 0.43 2 NC_053118.1 28020998 ~ 28023367 (+)
bowfin (Amia calva) TU102356 True 1940 lncRNA 0.38 5 CM030129.1 37451121 ~ 37455288 (+)