RNA id: TU130789



Basic Information


Item Value
RNA id TU130789
length 290
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G104598
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12156442 ~ 12156731 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tatatatatatatatatatatatatatatatatatatatatatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaatcaaccaatcacatggcaattgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgttctgctttgtccaataacttcaatgctcctggaagttggggtttcacgaaagtagagtcttttccaaacagattttccactggtttgaag

Function


GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130755 lncRNA downstream 12320 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA downstream 14427 12135968 ~ 12142015 (-) True G104591
TU130718 lncRNA downstream 117066 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 162103 11990829 ~ 11994339 (-) True AMCG00011140
TU130682 lncRNA downstream 178154 11977351 ~ 11978288 (-) True G104513
TU130874 lncRNA upstream 218336 12375067 ~ 12379667 (-) True G104660
TU130881 lncRNA upstream 245633 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 273234 12429965 ~ 12493101 (-) True G104680
TU130932 lncRNA upstream 367106 12523837 ~ 12524358 (-) True G104697
TU131026 lncRNA upstream 604314 12761045 ~ 12763667 (-) True G104776
AMCG00011136 mRNA downstream 71014 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011135 mRNA downstream 87367 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 96817 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011137 mRNA downstream 123043 12015153 ~ 12033399 (-) True AMCG00011137
AMCG00011138 mRNA downstream 147489 12004096 ~ 12008953 (-) True AMCG00011138
AMCG00011150 mRNA upstream 108776 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011149 mRNA upstream 144054 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011151 mRNA upstream 231532 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 271262 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 340616 12497347 ~ 12499099 (-) True AMCG00011159
TU130749 other downstream 87363 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 158656 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2412657 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2553701 9601884 ~ 9602741 (-) False AMCG00011084
TU130111 other downstream 2920249 9234411 ~ 9236193 (-) False AMCG00011058
TU130831 other upstream 169366 12326097 ~ 12328282 (-) True G104629
TU130897 other upstream 279140 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 391558 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 478125 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 785660 12942391 ~ 12943082 (-) False AMCG00011174

Expression Profile