RNA id: TU130798


Basic Information

Item Value
RNA id TU130798
length 1586
lncRNA type inter_gene
GC content 0.41
exon number 5
gene id G104603
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12250259 ~ 12254820 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGAGATCTGGCTGTGTCGTActgctgagtgtgtgtgtgtgtgtgtgaagggttCCCCCTACTGGCTGATCTCTCATACTGTGCCCTGGACTACCAAGACTCACCAGGAAGCAGCTCTGTCTTACGGAAGTGAAGATGAGGGGAGCTTTCCCAGTACTGTGGACCCTGACCTGTGCTGTGTTGGTCAATGcttcACATTCACAGGGAGTAAAACCATGGTCTGAAAATTCCACTCAGACCGCATCTCCCCCCAGTGTTCCAGTGCTGGCAATTGTTGCTGGGCTTCTGTCTGCTCTGGTGGTCGGTGCCTTCCTGGGCTCATACTTCGGGATCAAACGCTATAGGTCCAGGTCCCACCAGCCACACAGGAGGCAGGGATTTGGAACTCAGAGCAACTACTGACAACAGAGGGACTGTGGGACTGATCAGCCGCTTGCCAGCTGGCCCTGCAATACACTGACCGCAGCCCAATACCCCCCATCACTGAACAAATTGTAATATTGGCACTACTGTTGCTACTTTATGTtttgctgatttattttaaatcccacAACTACAAAACACTTAAATGAATGTTGGTCGCCTCCTAGTGGTGATTGTCATGTTGTATCTGTGGTACGTATTGTAATTTGTGTTAACAACAATTGTATTCTTGTTAGCTGAGCAGGAAATAAattgttaattgtattcatgTGTCTGCTTACTCTTATACACTTAAGAGtacatatctatttatttattaaaattccCAAGGTGGCGTagtcaatcaattaatttagtTATGGCGGGCCAATTGCTacaaatatatcacattatttttacatacaattacctgatttatttatacaattacctgttttttttcatttactgtaGTATTCTAGATAAAGTACACTAATGTCTCTGCATtcagattatttaattttcccttATGATGTCCATATACCCTGTCTGTAGTTTCTCATTGCTTTGGCCTCAAGGTCCAGGAGGTGTTTACtggataaatgtgttttttgtatattgtttattctTCGGTCTGTTGGTTCCCAAGGGATGATGCAAAGGCTTGAGATGCAAACACGAGAACTGGGGGAACTGAGTCACTGGGAACTGGGTGCAAGCTTAAAGGGGGAATTGAATTGTCTTGGtctgtaaaacaataataattattgatgTGCTGCCTCAGCCTATACAATGATTGGTACATATGAGTGTGACTTGATCAGGTTGGTATAAGAGGCATATTGAAGTGCCTTTGAGACTTGCTTAATATGCATCTCCTGTTACTGTAGTATTTGTATGCAATTGCCGAACCTATTTTTATCTTCTGTAAAACTTAACgctcaatacttttttttttactttttaactcCTGCTTCCAGACAGTTTTGTTTCCTAAGGTTTAGCTCAGCCCAGTGTGATTCCTGCaggctgatgtgtgctttgtgttgatGGAGtggtgtattttgtgtttcctAAGGAGTAGTTCATAAAGTGTAGGCCATTATTTGGAAGTCATGGCCTATTCATAGGATTATCTGATGAACTCATTAATACAATGTCTACTGCTACACAGTGATTACTGC

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130787 lncRNA upstream 98626 12151365 ~ 12151633 (+) True G104596
TU130734 lncRNA upstream 109794 12067451 ~ 12140465 (+) False AMCG00011141
TU130681 lncRNA upstream 271894 11977236 ~ 11978365 (+) True G104512
TU130628 lncRNA upstream 300547 11948240 ~ 11949712 (+) True G104477
TU130646 lncRNA upstream 317973 11930208 ~ 11932286 (+) True G104489
TU130804 lncRNA downstream 4792 12259612 ~ 12259861 (+) True G104609
TU130827 lncRNA downstream 78508 12333328 ~ 12334214 (+) True G104627
TU130882 lncRNA downstream 174676 12429496 ~ 12434556 (+) True G104666
TU130948 lncRNA downstream 296220 12551040 ~ 12551864 (+) True G104709
TU130967 lncRNA downstream 415556 12670376 ~ 12675071 (+) False AMCG00011163
AMCG00011142 mRNA upstream 101820 12143862 ~ 12148439 (+) True AMCG00011142
AMCG00011141 mRNA upstream 109921 12091319 ~ 12140338 (+) True AMCG00011141
AMCG00011134 mRNA upstream 199679 12045035 ~ 12050580 (+) True AMCG00011134
AMCG00011133 mRNA upstream 211886 12034297 ~ 12038373 (+) True AMCG00011133
AMCG00011120 mRNA upstream 261347 11986862 ~ 11988912 (+) True AMCG00011120
AMCG00011146 mRNA downstream 30052 12284872 ~ 12300928 (+) True AMCG00011146
AMCG00011147 mRNA downstream 58664 12313484 ~ 12322097 (+) True AMCG00011147
AMCG00011143 mRNA downstream 71277 12326097 ~ 12332753 (+) True AMCG00011143
AMCG00011145 mRNA downstream 80257 12335077 ~ 12345218 (+) True AMCG00011145
AMCG00011148 mRNA downstream 112177 12366997 ~ 12375038 (+) True AMCG00011148
TU130727 other upstream 182922 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 406170 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 439563 11808846 ~ 11810696 (+) False AMCG00011115
TU130500 other upstream 578919 11666198 ~ 11671340 (+) True G104382
TU130349 other upstream 1430836 10818688 ~ 10819423 (+) True G104273
TU130924 other downstream 270540 12525360 ~ 12527031 (+) True G104694
TU130962 other downstream 355309 12610129 ~ 12619055 (+) True G104719
TU131073 other downstream 687560 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 2364870 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 3065960 15320780 ~ 15322425 (+) False AMCG00011241

Expression Profile