RNA id: TU130874


Basic Information

Item Value
RNA id TU130874
length 2810
lncRNA type inter_gene
GC content 0.52
exon number 7
gene id G104660
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12375067 ~ 12379667 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcgatttaaaaaaaacaacaaaaaaaacctgcatgtactcattttattaattgagaTTAGAGTTACTAATTGACGTAATCAACTCATTTTAAAGAGCCAGtcaattgtatatatacaatgcATCTTGTATGAAACACCACAGGATTGGAAAATGAAGCCCACTACTGGCTCAGGATGAGATGAGATTGCATCTTCCATTTTGATAGTGACACACACAACTTCCTCAACACAAAACAGTACAACTCTGGTCTTTTTTTAGAATTTATTTTGGCAGAAACAGAAGAATGTTAAAACACTGGACTGGTAAAATTCTCTCCGGTCACCATTACACTCACTCCCTGTCCCTCACAGCAGCACTGGACATGCGAGCTgagcaggaggaggagtgggGATTGCCCCACCCCCTTCTCTGGCACGGATTGAGATTTAGGACTgaggaccccccccccacccaaaacaAGGACGCGAGTTTACAGTtgagtaaaattaaacaatttataaaaaaaggaCCAAAAACAAAGGGCAGCAACTTCAGCGAGGTCATTTCCTGTCCTTCACGGTCTGTCTCCACTGCCACAGCTCCGCAATCatCTTCTTGTCGTCCACTTTGAATCCATTCTTCACGTAGTTCTCAAATTTGCCTTCAATCTTGGGCAGCATTACACCCTTCTCTAGACTGGCCAACATCCTGGTCTTGATCTCGGCCGTTGTGGGGGGGGCACGGGGGGTCTGTGGCTTCTTGCTACTGCCTTTGTTGTCGGGGGTCTTGGCGGCCTGCTGGGGGGTCTTGGCGGCCTGCTGGGGGGTCTTGGCGGCCTGCTGGGGGGTAGAGCAGTCAATGAGTGCGAGTGTGGTAGAAGCACAGTGGCAGTGCGAGTGGGGTGGCAGCGTGGGCTTACCTTGCCCTGTCCCTTGCCAGTAGGCGTGGCACTCAGCATCTTCCCATTCTGTTTGGGAGTCTTCTTAGGCTGGGCAAGAGCGGGGTTAGTGCGTACCACCTTCACTGGcgtctcttcctcctcttcactCTCATCCTCTTCgtcatcatcatcctcatcatccTCATCATCATCGtcgtcatcctcctcctcctcctccatcttcATCTTTTTCTTGGGCTTTGATGCTCTGGGGTGCAGCTGGTCTCTTGCCAGTGGTCCTGggcacctcctcctcctcctcttcatcatcctcctcctcctcctcaaatGATGCATCCTCATCAGACATGAGGTGCTGTCCACTGATGTGCACAGGCCCTGCTCCTGCCTTGAGGCGGAACACAACGGGGGGGGTGATCTCGAATCCGCCCAGAGACACCTGCaattcaacacaacaTCTTTCACAGTGCTGTCCAAGCACACCTGTGGGGGGGgcgggcagagagagagagcataatTTAACAACTCTACACACAGGTGAATAAACACCAACACAAAGAGGGACAGACACATCCACAGGGGATCAGATGCACACACATCCCAACACAGGGGACAGACAGATTCAAGAGTACAAACTCACCATCCTGAGGGACAGCTGGTGCTCAAACTCATCGTCCTCTGGATTGAACACCACCTCCTTCCCCGCCTTCAGCTCACAACCTGTGAAACAGCAGAGTTGAGCCGCAGAGTCCAGCCGCGCAGCGAACACGGCACAGCTCGTTGCCATGGTATTCGAACTCGAGCGCGGAGAGACCCGGAAGCACGTGGAGATCATGTGCGCGGGGGGGTATCAGGGGGGGCTCCTTCTCTCCCCACGTCGCTACAGAGTAACCGTACACCGACACCAATCACAGCCCATCGGGCTAACCAAGAATAAAACCTATACGATGTCGCTGGAATGAGCGTCGCTCCGACAGCCATACCTCCACATTATTCCAAATAAATGCTGTttctattttcagtttaatgtatgattcaatgtattgatttattccaAAAACGGAGCGATACATTTTCGTTCGCTTCGAGTAAGGACAAACATGTGGCCTGTATACTGCGCTCGCTGGAGGTGGGAGAGATGGTGAACATACACCgaagtaaaagtaaattataagcATGCACATGATGTGACGAGGTCTATATAAACATCCAAGCTGGAAAACGCGGACTGTAGGGCTGCGCTGCGCCGACGAGACGCCGACACCACCGGCAGCGTGCAGCGCTGGGAGCACGCACGGCCGCCATCTTGCCTGCGCCGCACTGGCACACACGTGTTGGAGTCTCGCCGTGTGCCGAGTCCGGGGCCTCGGGCCTGCTGCTGTGGCCGCCGTACAACACGCCGGCTGTCCGGGCTGCACGACCGCGGGCAAACCGCGCAACACGGCGGGTCTGGGTCGCACGTGTTTTCACAGGAAAGTTCCTCTCCAGGAACCAGCCCAAGCCGcgcagcgagagagagggatagagagagagagagaggggggatagagtggagagagagagagagagagagagagagagagagagagagagagaggggggataGAGTGGAGAGAGAGCTGAACTGGATAAACTTGTGCATCACGTGGATGTACTAGTTTAGATAGAGAGTTGAACTGTCTaaactctctctgtctctgtctgtctctccagaCGCGCTCCACTCGGTAACTGTAAACTCGCGAATATTATAGCAATAATAAGCAAGGGCTTCacgtatttaaaaataaaagcggGTGTCCCTCACCATAAAGGAAGTTCTGTGGTCCCATCTGTTCCATGTCCATGCTGCTGTCCATGTTTCTGCCGAGTAGATCGAACTGAGCCGAGCTTCCCGGTGCTCGTAAAGAACTACACGCACAGCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130789 lncRNA downstream 218336 12156442 ~ 12156731 (-) True G104598
TU130755 lncRNA downstream 230945 12076728 ~ 12144122 (-) True G104568
TU130781 lncRNA downstream 233052 12135968 ~ 12142015 (-) True G104591
TU130718 lncRNA downstream 335691 12039169 ~ 12039376 (-) True G104545
TU130711 lncRNA downstream 380728 11990829 ~ 11994339 (-) True AMCG00011140
TU130881 lncRNA upstream 22697 12402364 ~ 12402564 (-) True G104665
TU130906 lncRNA upstream 50298 12429965 ~ 12493101 (-) True G104680
TU130932 lncRNA upstream 144170 12523837 ~ 12524358 (-) True G104697
TU131026 lncRNA upstream 381378 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 441406 12821073 ~ 12825491 (-) False AMCG00011169
AMCG00011149 mRNA downstream 68860 12300785 ~ 12306207 (-) True AMCG00011149
AMCG00011150 mRNA downstream 99518 12265507 ~ 12275549 (-) True AMCG00011150
AMCG00011136 mRNA downstream 289639 12071667 ~ 12085428 (-) True AMCG00011136
AMCG00011135 mRNA downstream 305992 12066495 ~ 12069075 (-) True AMCG00011135
AMCG00011139 mRNA downstream 315442 12053638 ~ 12059625 (-) True AMCG00011139
AMCG00011151 mRNA upstream 8596 12388263 ~ 12402070 (-) True AMCG00011151
AMCG00011152 mRNA upstream 48326 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011159 mRNA upstream 117680 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011154 mRNA upstream 126147 12505814 ~ 12507945 (-) True AMCG00011154
AMCG00011157 mRNA upstream 131157 12510824 ~ 12527131 (-) True AMCG00011157
TU130831 other downstream 46785 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 305988 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 377281 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2631282 9741133 ~ 9743785 (-) True AMCG00011086
TU130252 other downstream 2772326 9601884 ~ 9602741 (-) False AMCG00011084
TU130897 other upstream 56204 12435871 ~ 12457327 (-) True AMCG00011152
TU130955 other upstream 168622 12548289 ~ 12548993 (-) True G104715
TU130995 other upstream 255189 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 562724 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 563474 12943141 ~ 12944141 (-) False AMCG00011174

Expression Profile