RNA id: TU130955


Basic Information

Item Value
RNA id TU130955
length 589
RNA type TUCP
GC content 0.57
exon number 2
gene id G104715
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12548289 ~ 12548993 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTGTCCCTCCTCCAGCTTGCGCTCAGCCCCGGTGATCAGTGTGCCCTCGGTCGGGGGGGGCCTCGCTAGCATGTGGCACTGTTCCAGCTCTGAGGGGGGGAGACAGTcagtgtgcgtgtttgtgtgcctAAGTCTCTGCGTGTGCGTGTACGTGTGCGCATACATACATCTCTCATTCAGGTCTCTCCCTCCCACTCACCCTGAGTTTTCAGTCTCAGCTCCGCCCTGCAGCGCTCCAGCTCTGAGTGCACTCTGGCCAGCTCTTCttccaaagagagagagatggaagtggaagaggaagaggtggaggaggaagagcaagAGGAGGTGGACAAGGTGGCGAGGCGGTGAGAGCGACGAGGTCCTGAGGTGGAGGGGGCAGCAGTCTCGAGTGTCTCCGGGactgaactctctctctccttcccttcctctctttttggtttccctctctccttctcctgtAGGGCAGCAGTCAGCTCCTCTATCTGTTCATCACGCtcCTCAATCTCCTGGCTGTAGTATCTGCGGAGTGAGTTCTGCAGATTCTCGATCTTGTTCTCGTACCTCTCCTCCATCAGAGCTCTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130932 lncRNA downstream 23931 12523837 ~ 12524358 (-) True G104697
TU130906 lncRNA downstream 55188 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 145725 12402364 ~ 12402564 (-) True G104665
TU130874 lncRNA downstream 168622 12375067 ~ 12379667 (-) True G104660
TU130789 lncRNA downstream 391558 12156442 ~ 12156731 (-) True G104598
TU131026 lncRNA upstream 212052 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 272080 12821073 ~ 12825491 (-) False AMCG00011169
TU131116 lncRNA upstream 379679 12928672 ~ 12931083 (-) True G104845
TU131117 lncRNA upstream 386489 12935482 ~ 12940160 (-) True G104846
TU131208 lncRNA upstream 827140 13376133 ~ 13376997 (-) True G104915
AMCG00011156 mRNA downstream 6912 12529830 ~ 12541377 (-) True AMCG00011156
AMCG00011157 mRNA downstream 21158 12510824 ~ 12527131 (-) True AMCG00011157
AMCG00011154 mRNA downstream 40344 12505814 ~ 12507945 (-) True AMCG00011154
AMCG00011159 mRNA downstream 49190 12497347 ~ 12499099 (-) True AMCG00011159
AMCG00011152 mRNA downstream 108429 12427993 ~ 12439860 (-) False AMCG00011152
AMCG00011155 mRNA upstream 2215 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011166 mRNA upstream 33112 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011167 mRNA upstream 47141 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011170 mRNA upstream 266434 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011169 mRNA upstream 272032 12821025 ~ 12826880 (-) True AMCG00011169
TU130897 other downstream 90962 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 220007 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 479210 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 550503 11995413 ~ 11997786 (-) False AMCG00011140
TU130270 other downstream 2804504 9741133 ~ 9743785 (-) True AMCG00011086
TU130995 other upstream 85863 12634856 ~ 12640227 (-) True G104749
TU131119 other upstream 393398 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 394148 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 816090 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 1127138 13676131 ~ 13679262 (-) True G104929

Expression Profile