RNA id: TU130995


Basic Information

Item Value
RNA id TU130995
length 5276
RNA type TUCP
GC content 0.46
exon number 2
gene id G104749
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12634856 ~ 12640227 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttccgtcttttaagattttattaaaatattctgtaGCGGATTCACCATCACAAACATGATTGTTtctaacagaaaacaaaacaaaattaaaactgagaaatgaacaataaaaaaacaagccttCAGAGTCTAAGTTACAGGggaaagatttatttatttcattttgcagtCAGGTGTCAGAAATCAACAGtttaataagtaaaaaaaaaaaagcaaaaaaaaaaaaaaaaaaaaaaagtgttcacaCAATGTCAAAATGCACTTCCCATTCTCTAAAACTGTTCTCACCAATCAAATCGATTGATTAACAAATCAAAGATCAATCTGACCCACAGTTACCTGTGCCAAGAAAGCATGTCACCCTGTTCTGCTAAACCATCAAGTTTAATTAAGTCACTTCCCCTAcagaacagtgggcagctctaCAGGGTGCACCCCCCCCTTCCTGCATATACATTTCATTCCAATTAAATGCAGCCctgatatacaaaaataataacaagaatacAGGGTTAGCTAGGAatttagaaaacagaaaatacaaaactccATTTCCTCAGGGTTCCACAGTTTCTATACATCATGTtacacacaggagaggagggTGGGGGATAACAAaagaaaccccccaaaaataaacagaaacaaagacgGATATTAAAACAAACGCTGCACTGATCTCTTAGCCCCACAtcacttacaaaaacaaaatatgaactaCTACCACTACCACAGCAAGTAGCACGCACCCAGCCTGCAGGGAAACAGGAAGCCAGATTAAACCAGGAGAACGGAAAAAACACAGTACGAActcaacagaaaaaaagactaaGAAATTACCGTTTATGGTGCAGAAATttcattgaaaaaacaaaaatcaaaacaaaatgcatgagaATTAATACAAAACGGACCACTGTACTcccacagtgctgtgtgtgtgtgtgtgtggggggggggggggggggNNNNNNNNNNNNNNNNNNNNNtgcacagagacagacagacagactgacagaggGAGGGGTTCACCTCTGCCTATACCAGTCTCTCAAGAGTCTCCTGCCCAAACTGCTCCCCCTAACTTCAGTGTGAATGCAGCCGATTGAGCTGGATAAACGAGCCCCTTTTCGCAGTTCTGCGGTCTGCGCTGCTGCCCGCCATGGGGAACAAAACCTTCACTGacagcaaacaatatatatattaaagaaaaaaaaattaaaataaataattaaacaatgctCTTTAAAACCTCATAACTGATCCAATATCTTCTACTGGAAAAACTTAATTTTCCCCCTCTCAGCACTTCAGTGAGGGGTGAGCAGAGGGGCAGCTGGACCTCATTTACCCTGCTGAGGtctttaattgcttaatttgagTCATCAGGATAGGGAGTCAGAGCCCCCGTCTTAATCAGGTAGCTCACTGACGGGCTGTTAACCCCTCGAGGCCTGGAGCCACCCTGCCCTGCATCCATACCTACAGCACAGACTCGCTCCATCCAGCCACACACCGtcactcattcacacacacactcaccctccTAATCATTATCTGTCATTTAAAAGGGGGGGACCACACACCAACATTCTGGTATTTCACAGCACTCTGCTGAACTACCCATTACTTCATTTTCTTATCATAGTTTCCTAAtttaagagtgtgtgtgtatatatatatatatataaaatgtgtgtatatattacacatacaaaTTCAATACCTACTAGTTTGTTtgttaagatttaaaataaaataattaaaaaaaaggccTATAACAAatttatatatctttaaaatactaaaatatacacattatataacCACGCTGTGGTTCCACCCATTTCCATCACTGAATGAAAGCACTGTGGTGCTGAACCGGCCCAGTTCAGCCCTGCTGCTGCTTCCAGCGCATGAGCAGCAGGAAGGGGTGAAATTACATCAGATCACAGAGCTCTACAAGCTCAGTGCCCCCCCCAGGACAAGGGCTGTCCAGCACTGCAGTACAAACCTGCCACCCCCCCAGCACTGAGAGGGACAGAAAACCTCTGACTGCCAAATACACCCACCCTCTTCCTGAAATGGACAGAAGACAGGCAGCAGACAGCTCTGACAGACACAcgcctgcacacacacacacagcaggacaCAGCGGTAGAGCTGGGGAAGGGAGGCAATGACATCAtgaatttataatatatatatatatatatatatatatatatattttatgtttctctttTAAAGAGGATCACGAAAGTACAAAAgacaaaccccccccccaaaaaaaaaaaaaaaaagaaaaatgattgaGTCAAAGCCTGAGATTTCGCAttattcatacatatttttatcaCTGAATTTCAACGACAACGATATACCCAAAGactgttttcttatttgtatttaaaagtatttagcATAGTCTtcttctgtgtttgtatgtcaatgttatttcatgttttcaataggtttttttttttgcatttttttttttttttttttatcttcgtATAGTAAAGACCTCTGTAGTATCtaataaaaactgtacaaaGAGGAAAAGACCATAGAGTACATTCAATACATCTTGACGCTGAGGTACTAGGAGAGTAGATCCCTTGTGACAGAGCAGTTACAAAGATCCGAGGGGATCTTTGGCAGTTATGTTCACAGTGAGTCAATATTCACAGACTGCGCCCCCCTGTGGCCTGGCAGGGACGTGAATGAAACAAGTGTGTCCCTGTCAGGCTGGCACAGGCCGGCCGCTCTGCTACACTGTACAGAGACGAGGCTGCAGttcagagacagagggaaagagagggggatggagagaaaaagagagggggagCCCTGACGGTAAATCAAGCCACTCAGCTGCGCAGACAGGCCCCGCTCTGCGAAGCTGGACATTCCGAGAAATGAGCAGCTGACTGCGCACAGCTCACCCTGTAGCCCTGGGGgttggagagagacagagggtgatagagagagaacaagaaagAGAAGCAAGAGGAGACCATTGCTTCACTGCGGAGAGCGAGCTCAACTCAGTCCACGCGCCTCTGGAAAACAGCGGCTTGCGTCAGAAGAGGACACTGCACCATCTCCtgctccctcgctctctccctccttcccttctCATCTACACTGCCCTGATGTTTGTGGGgatccacacacacatgcgtCAGCCCTTTAACACACACCTGGACTGCTGGAGACCTTACGGGTGGTGGGGATGGGAAACAGAAAGCTCCAATTAAGTTAAAGCAAGTGGTTAAGCACTTAATTCAATGAGGCTGGTGAGTGCAGCAGGGCTGGGATAAGGGTGGCAGCAATCAGACACTGCCCCCTGGTGGTACTGAACTGGCACAACAGCCTTGTGCAGCAGCTCACACCGCGAGCACAGGACAGCACAacgcaaaacaaatgcattggaTTCAAGGGACTTACAGAAACCATTCTAGGCAAATTGCTTTGTATTGAGTTGTACTGCATGccttaaaactatatattttacatatacacacataaaaaggTATTGCAGTTCCTTCCTGAATACCCTGTAGACTTGGCCCATCAAGAAAGAGCAGAAGGGATTGGAGGGTTTCAGGTTTAAgcaaggaggaggagaaggaggaggaggaggagggagcaCAAGTGCTTTCGGGGGGGGGAAGGATGCAGTCTGAGGTTACTAGAAGGAAACCTAGGCAATAAAAATCATGCCAGCCTGACACGCACAAATCCAGAACCCAGAAATCACCAATACCTTTGGCTTCtatattatgattgttattacagttagttattataaaatgttgccaaaccaacaaaagggaatataaaaataatcaaaataaaaataaagatggagTATCAATCTGGACTCCCCAACACTAAAGGGCACTTGTTGAGAATGAcaatgagagggagaggagagcacCACTCCTGCTCAGACCTGCTCAACCAGACCTTCAGACTCAATCCACAGCCACAGCAAGATCACGATAACGAGAGAGCTGCAGCCCAGTCTCCTGCTCCACATTTTGCTTATCGGGTTCCCAcaccattttgtttcagtttttaaaaccaCGAGAAACGCATagtgccccccccccatgcAGGGATGCACACCTGGCACCcaacaacaatcataataatcatgttGTAATAACAACAATGACGACGACGACTACAACATAAGCTAAAGGAAAAGCAAACCCAACTACAAAGACCAGTagtctctctccccccccccctctgcttGGATCCAGATTTAATTATCGCATTTCCCAGAGAACCGGAGGTGTACAGCCAACACAAACCACACGCACCCCACTGAGCAGACAGCAGCCCACGGAGAGTGAGAGGAAGGGCAGACAGGAGAGAgtgaaaagggagagagaaatggagagctGCAGGAGCAAACAACTGGGCTTGCAGGCCGCTGGGTTCTGTTGAGTTTGGAGAGAACGGTTCTGCTCTGTAGGTGCAGTTGTGTCGTGTTCTGCTGGGACAGTAGCGCACAGTTGGGTTCAGGTGGGTCAGCTGTGTGCGGCTGGGTTCTGTTCTACCGGGACAGTAGCGCACGTTGGGTTGAGGTGGGATAGCTGTGTACGACTGGGTTCCGTTCTACCAGGCCAGCTGTGTGCGGCTGGGTTCTGTTCTACCAGGACAGTAGCACACGTTGGGTTTGGGACACCTGCGAGTCCTGTGGGGTTCTGTCCAGCTGGCATCGATTCTGTTGCACCAAGTTTTGTTGGTATTGCTCAGTTCTGTTGGGTATTGCTGGGTCCAGTTTAGTTGGGTAGGTTCTACTGTGCTGTGCTTGGTGCTATCCGGCTGTCCTGTTGCCTTGGTTTTGTATTGCGTTACATTGTGTCATGTCGGACTTGGCAGGGCCCAAGCCATGCCCGCCCCTCCCCAGGGTAGCGGTCACTGCCGCCGTCATGCGTCCTGCAGGGCGGAATGTGACGTGGGATTGGGTCGGGGCTACGGTGGGGGCTATTGGTCAGCCGGGACGTCTCTGTCAGGCTCCGGCTTGGAGGTCTGGCCGGGGgagggtgtgtggggggggtgcgaGATGGGCAGGGGACCGGAGACTAGGCCCTCCACTGTGGCCCCCGCCCCTGGCAGGCTGGCACCACCCACCCCAACGGCCACCATCCCCGCAGGGAACctagagggagggaaggggggagagagagagagagagacggagagataCACAATGAGTGAGAATATggagatgaagatgaagatatTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130932 lncRNA downstream 110498 12523837 ~ 12524358 (-) True G104697
TU130906 lncRNA downstream 141755 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 232292 12402364 ~ 12402564 (-) True G104665
TU130874 lncRNA downstream 255189 12375067 ~ 12379667 (-) True G104660
TU130789 lncRNA downstream 478125 12156442 ~ 12156731 (-) True G104598
TU131026 lncRNA upstream 120818 12761045 ~ 12763667 (-) True G104776
TU131049 lncRNA upstream 180846 12821073 ~ 12825491 (-) False AMCG00011169
TU131116 lncRNA upstream 288445 12928672 ~ 12931083 (-) True G104845
TU131117 lncRNA upstream 295255 12935482 ~ 12940160 (-) True G104846
TU131208 lncRNA upstream 735906 13376133 ~ 13376997 (-) True G104915
AMCG00011167 mRNA downstream 29212 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011166 mRNA downstream 39443 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011155 mRNA downstream 78213 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011156 mRNA downstream 93479 12529830 ~ 12541377 (-) True AMCG00011156
AMCG00011157 mRNA downstream 107725 12510824 ~ 12527131 (-) True AMCG00011157
AMCG00011170 mRNA upstream 175200 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011169 mRNA upstream 180798 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011174 mRNA upstream 302163 12942390 ~ 12956267 (-) True AMCG00011174
AMCG00011173 mRNA upstream 326310 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011175 mRNA upstream 345158 12985385 ~ 12986581 (-) True AMCG00011175
TU130955 other downstream 85863 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 177529 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 306574 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 565777 12067465 ~ 12069079 (-) False AMCG00011135
TU130712 other downstream 637070 11995413 ~ 11997786 (-) False AMCG00011140
TU131119 other upstream 302164 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 302914 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 724856 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 1035904 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 1355973 13996200 ~ 13996589 (-) True AMCG00011211

Expression Profile