RNA id: TU131072


Basic Information

Item Value
RNA id TU131072
length 4735
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G104814
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12935436 ~ 12940170 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cattttatttacataatcttTTTACAtcagaaaacatttacacaaataatgtcttcaattgtctttttttgttttgttttttatttccttttctttttcaatgtacAACATTCTCTGATCTGCAAACAGATAAGGAagggggaggaagagaaaaaaaaatacaaagccaaccaccattataaatattaataatttcacaCAGGGGCTGACAATAACTCAGTGTTTTCTACCAGCAAGATGTCCACTCCAGAGGGGTGGGAGTCACAAACCATCACACTCATGTCTCTCGAGAAGGACAGGAGGAAGGTGGGGCCACTGGTAGCAGATGCCAGTCTAGACCAGACCCTATAGTCagcagggggagaggggggggtcTGCAAAACCTGGGAGCACTGCCTTTCTAAATTCtctccaaaataataataacatttccaTCAGTTTAAAGTGATGAGGAAGAGGCCAGTTGTTGGTTTTCCTATTGGCCAACGGACCACAGCTGATATGCCCCCCCAAAGCTAACAGCTCAGACACCCCAGCCCACACCAGTCTTTCATCTGGTGGAAGATTCTCTCGGTTTCATTCACCGTTTTaagcgagtgtgtgtgtttcctaaTTCATCCTAGCTGGATTCCAGTAGAGGAGCGAAGGACAAAAGAATACTGCTACGAGAGTGTGGGTTACCACACAGTGGGAATGCCACATCATGGGAACATCAGCCCTTTGAAGAGATGTTTTTACACAATGGTTTCAATGAGGGACACTAACGTGCACACACAGATTCGCAGGACTGGTTGAGATGTGGCGGACACCTATTGCAGATGTAAAACTTGTAACACTTTAAATCGGATAGGCAACATTGAACATCCCTGGGCAGAAACCTATGAAGGTCCTTTATATCTGAagagactgacacacagcacagctacACAACCTCCTTCCAGCAAGTGGTGCTAAACTTTATATAGAAGCTTCAAACATTCCCCTGCAAAGATCTTAAAAGGCCAAAAGGGTGTTAACCACCAGCATTCAGGAGAGAAGCGCTTGAGACTGCACTGTGCCACATGTCAGATTAGAGTGTCCCTGTAATTTCACACGCGGGTGAAGTAGCGCAACGCCTGCTCTCCTGGAGAAACCACAGAGGGTCTCAAAGAACATCCATCCTAGCCTTCCAGCCGTGGCCATCTGTCCGTCCCTCACCACGTCAACTGTGCTCACATCTAACTCCCACTAACTAGTGAAACGTACATTCGCCTTAACAGGAGTTCACAGACATTGACATGACCACTTCCTAACTGCTAAGGTAAACCAGTCTGCTCCATATGCATTTTATATCAACATGTTTGAACAACGctgttcattattaatttatatttttgtcttgcaTATCagtcagaaacaaatacaaaaagcaaaatggCCCTGGGCATGCGTCCAGCAGAAGAGGCCACTGTACCTGCACTTGCCTGCAGCATGCATGAGAAATCTGGACCTGACTAAGACCACGCTGCACAGCCCTCCATGTACAGATCTGACAACGAACATGTGCTGCCAAGCGCTCGGCATGCGCTAACACCCCATGACAAAGCTCTGCCTCCACAGGCACACAGTCCTGCCCCAATGTTGCATATGAGCACAACTGTGGATTTCACCTGAACTGCACACTGTCACCGATCTTCACTGCTCAGACTGTCAGAAAGGGCCCTGAGAAAACCAAACGCCCTTTATACTGTGTGTGGGGCTTTTCTGTGAAGATTTAGGAAAACACCAAAGGCCCGTTTATTCACCAAGGCAACATGCACTGCAGGATATTCCAGTCAAAGTTAAGGGTAgagtttgcatttatttaaaacaacactaAATCGCCTCAAAACACTCCCATCAGGCTCCCCTGCAGATTCTCTTGTCATTAAGACCCACTCATCAAGAGCACATAAGCCTGTAAAAACAACAGCTAAaagattataattatcattattcatatttcacaacTGCAGTATCTGACATAGAAATGATAACTAAACCTGGCTATAGCAGAGtgacaaagaaaaggaaaaagtgaacacagtctaaatatatatattttttaaatgatgactCAAAAGTGAAAGGACAATCATTTGCTTTCTACATGAAACTGTACCGATACTGGAACTGGAATGGAAACTGCACTCCTCCAGCtcttgaagaaaaaagaaaaagtcttcTGGAGTTGTTACTGTGACTTCACTGCGAGTGAGTGGGCTCTGAGCAGAGCCAAGAGCTACTGTGGCAACTGTCAACATGCAGGGCTGTGCAGAGCCTCTGTGGCCAGTCCACATCAGCTAAGGCTCACATCTCTTTAGAGTTCAAGTTAAGTTTTTCTTTAACGGCACCGGCCCTCTGCACAGTCAGGTCTGGGGCAGGCTTTCAAACGGGCCTTAAAACTCAGGATATCTGTAGTGTGCGACTGCACTAGGGTACGAAGCCACATAATTACTATTAGTTATTTTCACAATGGCCTCCTGTAGCAGGCTGGCCTGCAGCTCTCTGGATGAAAACAGCGATGCACCCCCTCTCCTTTTTGTCAAATGCTTTTAACAGTCACATATAGCAGAGATCAAGACTCTAGGCATTTAGGACCACCAATAGGAGCCAGGCGAGTCTGGGATGAACCACCCTGCCACGCTGACACTCTGGGATCCTtcacacataaaaaaagaatCTGGATGACTTCATAGGGAAAATTCTAAAGAGGTCAAATTCTCGGGAACTCTCACTTGGACActctttgtttggttttattgcaTCGATACGCTTCTGTATAATGTAGATGAAGTaaccaaaacaaagtaaaataaatcatagatTTGAGTCTGGTATAAAAACATGCCACTACGCAAAGGAAATACGCTGCAACAAACTGGGAGGGGAAGCAGAGATTTAGACAGACATTGATGGCAAGAAGCAAGCTGGGGTAggacaaaagaaagaacaggTTAGGAATGTAGGGCATGGGAGTAGAGGACGAAGATGGGCTGAGAAAGAAGGAATAACAAAAAGCGAGTTGGGAGTGAGATTACACTCCTGAGGACCATGGGTACCCAAAGCCTACTGCCCATGCTGTGTGACCCTGGCAGTGGTGGTGGCTGCCTGCCATGCACTGATCAACAAAAAGTCTTATACCCCAGCTACCCAGACTCACTCTAATCTCCTCTACAGAGTTGCTAACCTTTCTTTGGCCCTGCTTTTGCCAACAGTGCAACCAACCCACCAGCAACCCTCCTCCTGGATCTTTGGCATTGGTGATGCTGCTGTTTTGTGCCTAGAATGGACAATAAGTCGGGACTTCAATCGCTACTTAGTTGAATACATCACAAGACATGCCTAATTGAAGagcacacccccccacacatcCCGCAGTGTGGTTTTCATCAATCACAGACTAGTGCTTCTCCCTCCTATTGTTGATTTCAGATCTCGGTCGTCATCTCAGGGTGTTCTGTTACTAATGCTAACAAACTGCTCTCAATGCCGAAATCTCCAGAAGGGCGAGGCGGAACTGCATTAGGGGATCTGTTCTGTGTGCCGGCTTTACCACGCAGCATGGACAAACTACGCAATTATTTCATAAAGCACATTACTTGTCACCCCAAACCACCCCCCCTTCTGACTAATCACAGCTCAATGCTACACACTGgggaataagaataaataaataaaaaaggtggGGGGTGAGCAGAATGGACTAAATACATTAGTGTCATAAACTCTGCACTTCAATTGTCCGGTGCAAAAATGTCAACAGTcagtggggggaggggtggtgggAGAATTGCTGACCCAGAGAAGAACGCTAAGCCGTCAGCAACTTCCTGTGTCTGCACATCTCATAGTGTATGCCCAACTTTAATTCAcatcatcatttttattattgcttgGTGCTGGGGCTGAACGGTCAAAAGTCAGGTGTGTTCACAAGCCAGGTATTCTTGCAGGCATTTCCCACAGTTCACACATCCTGGTCACCACATGCACAGACCCAATGCATACGCTGGAACCTGCGCCCTGATGTTTACAGGATACATTTGGTCGCATTTTCACCGATCATTCACAAACTACCACTTGAGTTACTCAAGTATAGAGCTACGGTGACATTGCCAGCAGAATCGGCACTATGCCATCAAACCCTCTTCAGCATTTCAAGTTCTGAGCCATTGAAGGTCAAAGCGCTGCCACTCTCACAGCTCTGTTAGCCATTAATTTTACAGACAAGGCCAGCCAGCTTTTGAAAACAgcccataaaaaataaacacacattaccACACTACCACTACTAAAGTCTATAGGTAAGGGCTCACACATGGCCAAGTGAGAGGCACTGTGACCTTTCCATGTAATTGAGCTGGGCTGTCTGTGAACTCCAGAGCTTTTCTGCTTGTGCCCTTAACCAGTGCGAGGGGCAGCAGTGACCCTGACCTCCTGAACCCTCCACCGCACCttcccatacacacacactccctctatctctctctctcccttccacGCCCATGTCTTGCAGCAGTGGTCCCAGAGAGCCCCAATCCAATAGCGTCCCTGCGGCTCATTCCTTCTCCACCCACTGCTGAAGAAAGGAATCCAATGAGCACTACTAGGTACACTGATCCTTCCCAATCCTTACAAGGGGGTAATGACAGGAGTGAACCACACAGGCCTGCTTACTTTCTACATGCATTTggatgaagaaaaatatatactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131054 lncRNA upstream 104156 12830849 ~ 12831280 (+) True G104800
TU130967 lncRNA upstream 260365 12670376 ~ 12675071 (+) False AMCG00011163
TU130948 lncRNA upstream 383572 12551040 ~ 12551864 (+) True G104709
TU130882 lncRNA upstream 500880 12429496 ~ 12434556 (+) True G104666
TU130827 lncRNA upstream 601222 12333328 ~ 12334214 (+) True G104627
TU131100 lncRNA downstream 78622 13018792 ~ 13019064 (+) True G104835
TU131175 lncRNA downstream 246778 13186948 ~ 13229416 (+) True G104883
TU131203 lncRNA downstream 613231 13553401 ~ 13555056 (+) True G104910
TU131220 lncRNA downstream 725777 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA downstream 725777 13665947 ~ 13679380 (+) False G104923
AMCG00011171 mRNA upstream 7474 12918054 ~ 12927962 (+) True AMCG00011171
AMCG00011176 mRNA upstream 20365 12901039 ~ 12915071 (+) True AMCG00011176
AMCG00011168 mRNA upstream 173120 12759630 ~ 12762316 (+) True AMCG00011168
AMCG00011163 mRNA upstream 256007 12674104 ~ 12679429 (+) True AMCG00011163
AMCG00011161 mRNA upstream 270459 12649660 ~ 12664977 (+) True AMCG00011161
AMCG00011172 mRNA downstream 20043 12960213 ~ 12961785 (+) True AMCG00011172
AMCG00011177 mRNA downstream 59364 12999534 ~ 13004427 (+) True AMCG00011177
AMCG00011181 mRNA downstream 216081 13156251 ~ 13169149 (+) True AMCG00011181
AMCG00011184 mRNA downstream 250609 13190779 ~ 13215914 (+) True AMCG00011184
AMCG00011187 mRNA downstream 345127 13285297 ~ 13314709 (+) True AMCG00011187
TU130962 other upstream 316381 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 408405 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 868099 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1091347 11842129 ~ 11844089 (+) True G104435
TU130563 other upstream 1124740 11808846 ~ 11810696 (+) False AMCG00011115
TU131073 other downstream 2210 12942380 ~ 12943082 (+) True G104815
TU131514 other downstream 1679520 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 2380610 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2910476 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2913594 15853764 ~ 15855784 (+) True AMCG00011252

Expression Profile