RNA id: TU131116


Basic Information

Item Value
RNA id TU131116
length 2412
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G104845
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12928672 ~ 12931083 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttcACTCTCATACAAGTCTGAGCCCTCGTCTGTGTGCAAGTGGAGATCATTGCAGCACCATCTATAGGAAGCAAGGCTGAAACTCCACTTACAgtcttttgattttcttttggataaactgaaaaaaagtgGGGGTCGTGACCTGAAGGAAGTTATCTATGCAATTGTGTGAGAGGCTCCACAGTGCTCTTTGGAGAGATTTCTTGAATCCCCTTCTCGATCTGTACCACAGATCCGGAGCACAGGCCTCGCCCCCCCGGGGCAGCTGGACatctctggctctctctctttccagaaAGAGTggccattttgtttgttttgttcatgttgGAAAGACTGTGCAcaagcaaaaaactaaatgcaaatcaATCACAAATGCATAATCATAGCCTTGTCTTTGGAGCCCTGGAGCCTGGGGGTTTCGTCTTCTATCGTGGCAGGATCATTGTGGGAAGTTGGATCTGAAAATGGTGATAAAACTCTCTCCTGAGGCTATCCATTGGGAAGTGCTCCAGTTACTATTACACCACTAAAAACCCACCGCAGAATCAAGCAAGAACATTTTAACCCGGGGGAAGAGAGACAATTCTACGCCTGGAAGTCCAGGAGAAGATTCCCTTCCCTTGCAGAGAGACAGGCCTGTCCTGGGGAGCGCTCGGGTACTCCAAGGaacataataatactactaataatgatgCCTTGACTCACTTAACTGAGCATTGTTTGCTGTGCTCTCATGTTTGTGAAGTTTGTTACCTGTGCCAGCtgttgaaatgcttttattaatttCGATTTCGCTCTCCTGCAAGTTTGAATTGAGGCAGGGGGACAGGAGGGTTTGTGACACAGTTCTTAAATCTCAAGACTGGACTGGAGAGTGTGCCTGTTGTAGGTTCAGACCAGTCTCTGAACTGGTGTGGTCAGGCTCAATGTGAGTCACTGAATGTCTCTCACCATTGCCACCCGTTACTGGCCTGTGCAGGGGCTTGGGAAACCAGGGAAAAGGTCCAAGTCCTTCAAGACAGGGCAGTATCTATCCTTTATTAGCAACCCTATtgatactattattattattattattattattattattattattattattatttagtgaaGTGTGGAATTCCAACCATTGTTTACGACACTGCTGGCATTCCGTTTGGTCTCATTGAAATGAAGTGTTAGGaggtcatgtttttgttttctttattattttactgcagCCTGGAATCCTTTAAGCTATTCTGAATTCTAGAACACTTTCTCTGTGTAGCTATAGTAACAGATGTCAAATGGCaatcgttatttatttattttctctccaatTGTTATTTTCACAGCAGCAGAAAGGTTACAATGACACGGCCGTAACTGTTCTTCTTTAGGTTATGTGGCGTTTCTGGGCTGTGTGGCGGAGCTCGTTTCAGATGCCGAATTTAGAGTGCAATTCGAAAGATGTAATGGGAAACCAAATCTAATTTTAAGgtatatatctgtatgtgtgcgtgtgtctatTTATGGAGTTACTGCAGAAAAAAACTCTTCTGTGAACAGTTGCCGAGGCCCCTGAGGAAAGACAGCCTGCGTCCTGAACCGGCTGCTTTCGGAACTGAAGTAAGATCATGCGCACCTTCATTTTGAAACGGAACTTGCCAACGTAAAGGTCCTGACTCATCCCTCGCCACGCTGGCTGTCCATGTGGCGTCCACGGCATCCTTCCTCTCCCGGGGCTCTCCAACCCTGCAGGCCACACTGACCTCCCAGTTACTCAACTTGTTGGATCAGCTTATTAATCGCATTTATTTGATACTTCTGTATTTGACTACAGTCTCTGATCTACTACAGCTAGTAGGAGTGATTATCGCTCCACAAGTTTCCATTATCCATTTCTTTTCCAggtgagactgtgtgtgtgtgatgttgtaGGTACATTGATGCAATGTAGAgattttcttagtttttctctctcaatgccaacttgttaaaaaaaaggccTTAAACCTATTTGATAGATGTCTAATGGATAAAAGAACCAGATCAATGAAGTAATTGACTGCCCACCCCAACTGCCCCGGAGCAGAGCACTTGCATCGATTGTGCTGGACAgggctttctttctttaaatgttgaaatgtaaagtttgtcagggatattttataatgtagAATTGACAGTactgtattgctttttattattgtattattcgtgttattattatttcccttgGGCTTCAGTTGCTTAATATTTAAGCTGCAAATCAAACCTTGAGATTCATCCGCACCTTGATGTGAtgctgtcatttgtttttgctttggcTCTTTTCAATTTGTGAAGTTTaatatacaggaaaaaaaaaatctacaccTGAACATAAGACCCGTGCTTCATCTTCTGAGTTTCTAAGAATGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131049 lncRNA downstream 103181 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 165005 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 404314 12523837 ~ 12524358 (-) True G104697
TU130906 lncRNA downstream 435571 12429965 ~ 12493101 (-) True G104680
TU130881 lncRNA downstream 526108 12402364 ~ 12402564 (-) True G104665
TU131117 lncRNA upstream 4399 12935482 ~ 12940160 (-) True G104846
TU131208 lncRNA upstream 445050 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 446974 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 622357 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 731103 13662186 ~ 13667716 (-) True G104928
AMCG00011169 mRNA downstream 101792 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011170 mRNA downstream 109328 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011167 mRNA downstream 323028 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011166 mRNA downstream 333259 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011155 mRNA downstream 372029 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011174 mRNA upstream 11307 12942390 ~ 12956267 (-) True AMCG00011174
AMCG00011173 mRNA upstream 35454 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011175 mRNA upstream 54302 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011178 mRNA upstream 57566 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011180 mRNA upstream 73455 13004538 ~ 13013351 (-) True AMCG00011180
TU130995 other downstream 288445 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 379679 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 471345 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 600390 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 859593 12067465 ~ 12069079 (-) False AMCG00011135
TU131119 other upstream 11308 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 12058 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 434000 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 745048 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 1065117 13996200 ~ 13996589 (-) True AMCG00011211

Expression Profile