RNA id: TU131117


Basic Information

Item Value
RNA id TU131117
length 4679
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G104846
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12935482 ~ 12940160 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttcttcatccAAATGCATGTAGAAAGTAAGCAGGCCTGTGTGGTTCACTCCTGTCATTACCCCCTTGTAAGGATTGGGAAGGATCAGTGTACCTAGTAGTGCTCATTGGATTCCTTTCTTCAGCAGTGGGTGGAGAAGGAATGAGCCGCAGGGACGCTATTGGATTGGGGCTCTCTGGGACCACTGCTGCAAGACATGGGCgtggaagggagagagagagatagagggagtgtgtgtgtatgggaaGGTGCGGTGGAGGGTTCAGGAGGTCAGGGTCACTGCTGCCCCTCGCACTGGTTAAGGGCACAAGCAGAAAAGCTCTGGAGTTCACAGACAGCCCAGCTCAATTACATGGAAAGGTCACAGTGCCTCTCACTTGGCCATGTGTGAGCCCTTACCTATAGACTTTAGTAGTGGTAGTGTggtaatgtgtgtttattttttatgggcTGTTTTCAAAAGCTGGCTGGCCTTGTCTGTAAAATTAATGGCTAACAGAGCTGTGAGAGTGGCAGCGCTTTGACCTTCAATGGCTCAGAACTTGAAATGCTGAAGAGGGTTTGATGGCATAGTGCCGATTCTGCTGGCAATGTCACCGTAGCTCTATACTTGAGTAACTCAAGTGGTAGTTTGTGAATGATCGGTGAAAATGCGACCAAATGTATCCTGTAAACATCAGGGCGCAGGTTCCAGCGTATGCATTGGGTCTGTGCATGTGGTGACCAGGATGTGTGAACTGTGGGAAATGCCTGCAAGAATACCTGGCTTGTGAACACACCTGACTTTTGACCGTTCAGCCCCAGCACcaagcaataataaaaatgatgatgTGAATTAAAGTTGGGCATACACTATGAGATGTGCAGACACAGGAAGTTGCTGACGGCTTAGCGTTCTTCTCTGGGTCAGCAATTCTcccaccacccctccccccactgACTGTTGACATTTTTGCACCGGACAATTGAAGTGCAGAGTTTATGACACTAATGTATTTAGTCCATTCTGCTCACCCCccaccttttttatttatttattcttattcccCAGTGTGTAGCATTGAGCTGTGATTAGTCAGAAGGGGGGGTGGTTTGGGGTGACAAGTAATGTGCTTTATGAAATAATTGCGTAGTTTGTCCATGCTGCGTGGTAAAGCCGGCACACAGAACAGATCCCCTAATGCAGTTCCGCCTCGCCCTTCTGGAGATTTCGGCATTGAGAGCAGTTTGTTAGCATTAGTAACAGAACACCCTGAGATGACGACCGAGATCTGAAATCAACAATAGGAGGGAGAAGCACTAGTCTGTGATTGATGAAAACCACACTGCGGgatgtgtgggggggtgtgctCTTCAATTAGGCATGTCTTGTGATGTATTCAACTAAGTAGCGATTGAAGTCCCGACTTATTGTCCATTCTAGGCACAAAACAGCAGCATCACCAATGCCAAAGATCCAGGAGGAGGGTTGCTGGTGGGTTGGTTGCACTGTTGGCAAAAGCAGGGCCAAAGAAAGGTTAGCAACTCTGTAGAGGAGATTAGAGTGAGTCTGGGTAGCTGGGGTATAAGACTTTTTGTTGATCAGTGCATGGCAGGCAGCCACCACCACTGCCAGGGTCACACAGCATGGGCAGTAGGCTTTGGGTACCCATGGTCCTCAGGAGTGTAATCTCACTCCCAACTCGCTTTTTGTTATTCCTTCTTTCTCAGCCCATCTTCGTCCTCTACTCCCATGCCCTACATTCCTAAcctgttctttcttttgtccTACCCCAGCTTGCTTCTTGCCATCAATGTCTGTCTAAATCTCTGCTTCCCCTCCCAGTTTGTTGCAGCGTATTTCCTTTGCGTAGTGGCATGTTTTTATACCAGACTCAAatctatgatttattttactttgttttggttACTTCATCTACATTATACAGAAGCGTATCGAtgcaataaaaccaaacaaagagTGTCCAAGTGAGAGTTCCCGAGAATTTGACCTCTTTAGAATTTTCCCTATGAAGTCATCCAGattctttttttatgtgtgaAGGATCCCAGAGTGTCAGCGTGGCAGGGTGGTTCATCCCAGACTCGCCTGGCTCCTATTGGTGGTCCTAAATGCCTAGAGTCTTGATCTCTGCTATATGTGACTGTTAAAAGCATTTGACAAAAAGGAGAGGGGGTGCATCGCTGTTTTCATCCAGAGAGCTGCAGGCCAGCCTGCTACAGGAGGCCATTGTGAAAATAACTAATAGTAATTATGTGGCTTCGTACCCTAGTGCAGTCGCACACTACAGATATCCTGAGTTTTAAGGCCCGTTTGAAAGCCTGCCCCAGACCTGACTGTGCAGAGGGCCGGTGCCGTTAAAGAAAAACTTAACTTGAACTCTAAAGAGATGTGAGCCTTAGCTGATGTGGACTGGCCACAGAGGCTCTGCACAGCCCTGCATGTTGACAGTTGCCACAGTAGCTCTTGGCTCTGCTCAGAGCCCACTCACTCGCAGTGAAGTCACAGTAACAACTCCAgaagactttttcttttttcttcaagaGCTGGAGGAGTGCAGTTTCCATTCCAGTTCCAGTATCGGTACAGTTTCATGTAGAAAGCAAATGATTGTCCTTTCACTTTTGagtcatcatttaaaaaatatatatatttagactgtgttcactttttccttttctttgtcaCTCTGCTATAGCCAGGTTTAGTTATCATTTCTATGTCAGATACTGCAgttgtgaaatatgaataatgataattataatcttTTAGCTGTTGTTTTTACAGGCTTATGTGCTCTTGATGAGTGGGTCTTAATGACAAGAGAATCTGCAGGGGAGCCTGATGGGAGTGTTTTGAGGCGATTtagtgttgttttaaataaatgcaaactcTACCCTTAACTTTGACTGGAATATCCTGCAGTGCATGTTGCCTTGGTGAATAAACGGGCCTTTGGTGTTTTCCTAAATCTTCACAGAAAAGCCCCACACACAGTATAAAGGGCGTTTGGTTTTCTCAGGGCCCTTTCTGACAGTCTGAGCAGTGAAGATCGGTGACAGTGTGCAGTTCAGGTGAAATCCACAGTTGTGCTCATATGCAACATTGGGGCAGGACTGTGTGCCTGTGGAGGCAGAGCTTTGTCATGGGGTGTTAGCGCATGCCGAGCGCTTGGCAGCACATGTTCGTTGTCAGATCTGTACATGGAGGGCTGTGCAGCGTGGTCTTAGTCAGGTCCAGATTTCTCATGCATGCTGCAGGCAAGTGCAGGTACAGTGGCCTCTTCTGCTGGACGCATGCCCAGGGccattttgctttttgtatttgtttctgactGATAtgcaagacaaaaatataaattaataatgaacagCGTTGTTCAAACATGTTGATATAAAATGCATATGGAGCAGACTGGTTTACCTTAGCAGTTAGGAAGTGGTCATGTCAATGTCTGTGAACTCCTGTTAAGGCGAATGTACGTTTCACTAGTTAGTGGGAGTTAGATGTGAGCACAGTTGACGTGGTGAGGGACGGACAGATGGCCACGGCTGGAAGGCTAGGATGGATGTTCTTTGAGACCCTCTGTGGTTTCTCCAGGAGAGCAGGCGTTGCGCTACTTCACCCGCGTGTGAAATTACAGGGACACTCTAATCTGACATGTGGCACAGTGCAGTCTCAAGCGCTTCTCTCCTGAATGCTGGTGGTTAACACCCTTTTGGCCTTTTAAGATCTTTGCAGGGGAATGTTTGAAGCTTCTATATAAAGTTTAGCACCACTTGCTGGAAGGAGGTTGTgtagctgtgctgtgtgtcagtctctTCAGATATAAAGGACCTTCATAGGTTTCTGCCCAGGGATGTTCAATGTTGCCTATCCGATTTAAAGTGTTACAAGTTTTACATCTGCAATAGGTGTCCGCCACATCTCAACCAGTCCTGCGAATCTGTGTGTGCACGTTAGTGTCCCTCATTGAAACCATTGTGTAAAAACATCTCTTCAAAGGGCTGATGTTCCCATGATGTGGCATTCCCACTGTGTGGTAACCCACACTCTCGTAGCAGTATTCTTTTGTCCTTCGCTCCTCTACTGGAATCCAGCTAGGATGAAttaggaaacacacacactcgcttAAAACGGTGAATGAAACCGAGAGAATCTTCCACCAGATGAAAGACTGGTGTGGGCTGGGGTGTCTGAGCTGTTAGCTTTGGGGGGGCATATCAGCTGTGGTCCGTTGGCCAATAGGAAAACCAACAACTGGCCTCTTCCTCATCACTTTAAACTGAtggaaatgttattattattttggagaGAATTTAGAAAGGCAGTGCTCCCAGGTTTTGCAgacccccccctctccccctgctGACTATAGGGTCTGGTCTAGACTGGCATCTGCTACCAGTGGCCCCACCTTCCTCCTGTCCTTCTCGAGAGACATGAGTGTGATGGTTTGTGACTCCCACCCCTCTGGAGTGGACATCTTGCTGGTAGAAAACACTGAGTTATTGTCAGCCCCTGtgtgaaattattaatatttataatggtggttggctttgtatttttttttctcttcctccccctTCCTTATCTGTTTGCAGATCAGAGAATGTTgtacattgaaaaagaaaaggaaataaaaaacaaaacaaaaaaagacaattgaagacatta

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0048568 embryonic organ development biological_process
GO:0048869 cellular developmental process biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131116 lncRNA downstream 4399 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 109991 12821073 ~ 12825491 (-) False AMCG00011169
TU131026 lncRNA downstream 171815 12761045 ~ 12763667 (-) True G104776
TU130932 lncRNA downstream 411124 12523837 ~ 12524358 (-) True G104697
TU130906 lncRNA downstream 442381 12429965 ~ 12493101 (-) True G104680
TU131208 lncRNA upstream 435973 13376133 ~ 13376997 (-) True G104915
TU131209 lncRNA upstream 437897 13378057 ~ 13378299 (-) True G104916
TU131214 lncRNA upstream 613280 13553440 ~ 13555074 (-) True G104921
TU131241 lncRNA upstream 722026 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 725635 13665795 ~ 13679262 (-) False G104929
AMCG00011169 mRNA downstream 108602 12821025 ~ 12826880 (-) True AMCG00011169
AMCG00011170 mRNA downstream 116138 12815427 ~ 12819344 (-) True AMCG00011170
AMCG00011167 mRNA downstream 329838 12596134 ~ 12605644 (-) True AMCG00011167
AMCG00011166 mRNA downstream 340069 12582105 ~ 12595413 (-) True AMCG00011166
AMCG00011155 mRNA downstream 378839 12551208 ~ 12556643 (-) True AMCG00011155
AMCG00011174 mRNA upstream 2230 12942390 ~ 12956267 (-) True AMCG00011174
AMCG00011173 mRNA upstream 26377 12966537 ~ 12984196 (-) True AMCG00011173
AMCG00011175 mRNA upstream 45225 12985385 ~ 12986581 (-) True AMCG00011175
AMCG00011178 mRNA upstream 48489 12988649 ~ 12999288 (-) True AMCG00011178
AMCG00011180 mRNA upstream 64378 13004538 ~ 13013351 (-) True AMCG00011180
TU130995 other downstream 295255 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 386489 12548289 ~ 12548993 (-) True G104715
TU130897 other downstream 478155 12435871 ~ 12457327 (-) True AMCG00011152
TU130831 other downstream 607200 12326097 ~ 12328282 (-) True G104629
TU130749 other downstream 866403 12067465 ~ 12069079 (-) False AMCG00011135
TU131119 other upstream 2231 12942391 ~ 12943082 (-) False AMCG00011174
TU131118 other upstream 2981 12943141 ~ 12944141 (-) False AMCG00011174
TU131202 other upstream 424923 13365083 ~ 13367074 (-) True G104909
TU131247 other upstream 735971 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 1056040 13996200 ~ 13996589 (-) True AMCG00011211

Expression Profile