RNA id: TU131214


Basic Information

Item Value
RNA id TU131214
length 1635
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G104921
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13553440 ~ 13555074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAGACAAGAAgtaactttaattaaatattgtgaaaGTTGAAAAGTTATTATACAGCTCAAAGTTCATCAAAAATGATAACAATCTAtacagtagttttttttcttttccctattAATACAACTGTTCAGTGTGTGTCTAGTCAAAGAAGGATTCTGAAAAAAGAAGGAAGGGAAAACCAGCTTTGTCGtttgtttgtcagtttgtttttctctcagaCTTTATTGTCTGCAAATCTGCATGACAAAATTATATCTCGCTTACAATTAAGTCATTACAAGGTAACCtgaatctttttaaaattattattggtaaaaacaaaacagaaacaaaatcaaaccccagaaacattaatattgttaaaCAAGTGCCTACAACAGAGGAGCTCAAAAACCCTCCCCTTAGTAAAAGTCCCTTAGATGATAACTgatgttcttaaaaaaataatcctacacgagaaaaactgaaaagccATATTCTCCTCAGAATACAGAATCTCTATCTAAAATACAGTGCATGTGTTCACCAAAATGACAGGGTGCAGGTGGACTCAGGTGAGGGACATACAGTTACTCTCCCTCAAACAGAGAGGGACGCAACTGCGATTTTCTGTGATACAATGAAAGGGCTCTCAATGCAGGGGATtgtgggaagagagagagagagacagagagagagacagagagagagagagagagagagggggcattTCACACAGATGTATGTAATTATACTATAGTGTTATCAGTTGTAGCGATGTTAGGAATTTGCAGACagttataaatgtgtaattactcTGTAGTCATAAGCATGGCTACAGTCTGGGCATTACTGCAGTGTTGACATGCAGTAACTACACAAGTTAGTATTAAGAGGTGTGTAAATCCTTCGCTTGCTTTAAGGGACTGTTCATATTCTGCGAGTGACCATGTGGCGGAACACAGactcctaacaaaaacaaagcaacaaaaaaaaaagacatggcttttatttttctctctttcttaaaCCGCCACTAACAGAAAAAAAgggaacagaaaaacagatgaaATAACAGGTTTCACTTTAACTTAAAAATACAGCgcaccctcccccccccacctacCCACTCGcaacacacattaaatattaatcacCTCAAAAGTCGGCCTTTCCACTTACTCCCCCACAACCCCCAATGAAAAAAATGCCAGCGCTTCGACAAGATCGTAAAAATGCTGAGTTCCAAGTATGAAGACTCAGAAAACAGATTCACATCAAGGTAACAAAAAAAGttcattttgtgctttttttttaaatataaaaaaactccTAACggtttctggttttgttttaaatactctGTGATGACAGACAACCCTGGTGAAGATTACAACATACATGTGAAAGAATGGGTATGATTTTGCATTATTAAGGCATCCAATCTGCTGGTTCAAATGtcagtgaaagagaaaataagaaacaaacagaagagaGATACAGCAGgcataaagaaagaaacaaagaccaaagaaagaaacaaagaaagtattttcatatttttccccccaaaatggTCTTCCTATTTTCAATGCACAAAATGCAACCATCACTCCCACAGGAAGAGATCCCATGCATACTATTAGTTTAAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131209 lncRNA downstream 175141 13378057 ~ 13378299 (-) True G104916
TU131208 lncRNA downstream 176443 13376133 ~ 13376997 (-) True G104915
TU131117 lncRNA downstream 613280 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 622357 12928672 ~ 12931083 (-) True G104845
TU131049 lncRNA downstream 727949 12821073 ~ 12825491 (-) False AMCG00011169
TU131241 lncRNA upstream 107112 13662186 ~ 13667716 (-) True G104928
TU131246 lncRNA upstream 110721 13665795 ~ 13679262 (-) False G104929
TU131342 lncRNA upstream 309447 13864521 ~ 13867615 (-) True G104998
TU131407 lncRNA upstream 510267 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 515330 14070404 ~ 14070969 (-) True G105052
AMCG00011188 mRNA downstream 209976 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011183 mRNA downstream 361300 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011182 mRNA downstream 448885 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011179 mRNA downstream 519321 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 540089 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011194 mRNA upstream 129560 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 188844 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 197479 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011203 mRNA upstream 301783 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011208 mRNA upstream 364594 13919668 ~ 13922667 (-) True AMCG00011208
TU131202 other downstream 186366 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 609299 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 610358 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 913213 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 1004447 12548289 ~ 12548993 (-) True G104715
TU131247 other upstream 121057 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 441126 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 512141 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1815328 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1944460 15499534 ~ 15502133 (-) True AMCG00011251

Expression Profile