RNA id: TU131222



Basic Information


Item Value
RNA id TU131222
length 814
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G104923
representative False

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13665947 ~ 13679380 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atatatatatatatatatatatataTATATATATGCAAGTCTTCTTAAAGTTAAAGATGAAAGTTGTGATCGTGGCTCTGGACGCAGAACGGTTGTGGCTGCTGGTGGGGAGGGTGGGGCTGACCCAGCCGTGAGGAGCAGCTTTGAGTGCttaagggaggagaggagaagggaaGCAGGCTGTGTCACAGGGGCCTGTCCTGCAGGAGGCTCCGTGTCCCCCAGGGGCCCTGTCTGTCGCATCATGTATCAAACTACAGAAAGTGCTCTACTGACTACAGGCATTCTTCATCAGTTGATGTGTTCACAGTCGgacaacaaacacaagaaaaagcCTTCCGTCAGACTCTGAGGCATTACACATTAATAAATGACcaaattttcttttcttttttatatatatatatataattttttttttttttgagaggggctagtttttttttttgttttttttttggttttaaattgaaatattttaaatcatgacAGTTCTGTAACATGAAATCCATGGGCTGTGCTTTAGGGTTGGGAGAGTTTACTAAAAACACTATTAGTTAttgcaagattaaaaaaataaaaaataaacaagagccTCCTCTTTCCTAATAAAAATAGGCATTGCTTTTTTCCAATCAATTAAGTCTTGTTTTGATTGTACTCATAATGATCTTTTATGTATAACATTaaacaattcattaaaaaatggttCCAAGCTCATTATTTGAGTTGTAGTGATAGTGGGTAGTCTGGGCTGCTGTTTTTAGTGTAGCTTGTTATGAGCAAACAAGGCTGTGTGATCTGGTGTTTTAAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131203 lncRNA upstream 110891 13553401 ~ 13555056 (+) True G104910
TU131175 lncRNA upstream 436531 13186948 ~ 13229416 (+) True G104883
TU131100 lncRNA upstream 646883 13018792 ~ 13019064 (+) True G104835
TU131072 lncRNA upstream 725777 12935436 ~ 12940170 (+) True G104814
TU131054 lncRNA upstream 834667 12830849 ~ 12831280 (+) True G104800
TU131310 lncRNA downstream 178451 13857831 ~ 13858192 (+) True G104979
TU131311 lncRNA downstream 179271 13858651 ~ 13858982 (+) True G104980
TU131317 lncRNA downstream 189022 13868402 ~ 13876178 (+) False AMCG00011204
TU131374 lncRNA downstream 311575 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 333741 14013121 ~ 14061024 (+) False AMCG00011209
AMCG00011190 mRNA upstream 121664 13538248 ~ 13544283 (+) True AMCG00011190
AMCG00011191 mRNA upstream 160427 13502635 ~ 13505520 (+) True AMCG00011191
AMCG00011192 mRNA upstream 173491 13487946 ~ 13492456 (+) True AMCG00011192
AMCG00011189 mRNA upstream 286152 13376591 ~ 13379795 (+) True AMCG00011189
AMCG00011185 mRNA upstream 298920 13348564 ~ 13367027 (+) True AMCG00011185
AMCG00011195 mRNA downstream 7876 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011199 mRNA downstream 12456 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011196 mRNA downstream 28144 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011197 mRNA downstream 43159 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011202 mRNA downstream 172061 13851441 ~ 13854844 (+) True AMCG00011202
TU131073 other upstream 722865 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1046892 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1138916 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1598610 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 1821858 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 940310 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1641400 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 2171266 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 2174384 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2283960 15963340 ~ 15984079 (+) True G105373

Expression Profile