RNA id: TU131241


Basic Information

Item Value
RNA id TU131241
length 810
lncRNA type inter_gene
GC content 0.56
exon number 5
gene id G104928
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13662186 ~ 13667716 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTTCCCCCTTGCCCCAAGTCCTCACACCTTGTTCTGCGCCCCGGCGTCAGGACTGCCCGTGTCCCCGGTGTAGTGTGCGGCAGCCCCCAGGTCCACAGTTTTGGAAGGGACGCCCCCCCGTTTCCGCGTGTTGGTCGTCTCCGTGGCCTGAGTGAACTGGGTGCCCCTGGGCGTCGCTGTGTCCTCCTCATCCTTGAACTCTGACTTGCCCGGCCTGCCGTTGCGGGCAGCTCGCTCTCGGTCTTCCTCGTTGTCGCTGAACCTGTCAGGGGAGTCGTCCCTCTCCTTCTTGCGGAACTTGTTGATGGTGTCGTCGATTGTGCTGCCGATCTTGTCGCTGATCTCACCCAGCTTCTCGCTGAAGGGGAACACCCCCTTATTCTTGTCCCAGTCCTCATCCCACCGTGACTTGGGCTCCGACTCATACCGGTCTCCCGTGTATCTGAAGCCCCCCAAGCTGTCAGAAGAGACCCCGATGTATTTGTCCTTGTTCTTCTTTgccttcttcctctcctcccgAAGCCGGTCATCGTCCTGCACGAAATCCACCATCTCTTTCACCTTCTGCCGCACGTTGACGCCCTGATCCTTCCCGTTCTCATCTACAAAATGATAATTTTCCATCGACCGCAGATCATAGATGTGTTCCCTGGCGCTCGTCACGACTCTCTCTGACCCGTTTCTGATGAGGTATGCTAGGAGCAATAAGGCCTTGTAAACTCTTCTCCAGTTCTTCTTGTTGTCCTTCAACATGCGAGTCCACAGCATGTTCATGACTTCTGGGAACTGTTCGTACATGAATGTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131214 lncRNA downstream 107112 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 283887 13378057 ~ 13378299 (-) True G104916
TU131208 lncRNA downstream 285189 13376133 ~ 13376997 (-) True G104915
TU131117 lncRNA downstream 722026 12935482 ~ 12940160 (-) True G104846
TU131116 lncRNA downstream 731103 12928672 ~ 12931083 (-) True G104845
TU131342 lncRNA upstream 196805 13864521 ~ 13867615 (-) True G104998
TU131407 lncRNA upstream 397625 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 402688 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 531111 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 551239 14218955 ~ 14261910 (-) True G105080
AMCG00011188 mRNA downstream 318722 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011183 mRNA downstream 470046 13186948 ~ 13192140 (-) True AMCG00011183
AMCG00011182 mRNA downstream 557631 13056733 ~ 13104555 (-) True AMCG00011182
AMCG00011179 mRNA downstream 628067 13019906 ~ 13034119 (-) True AMCG00011179
AMCG00011180 mRNA downstream 648835 13004538 ~ 13013351 (-) True AMCG00011180
AMCG00011194 mRNA upstream 16918 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011200 mRNA upstream 76202 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011198 mRNA upstream 84837 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011203 mRNA upstream 189141 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011208 mRNA upstream 251952 13919668 ~ 13922667 (-) True AMCG00011208
TU131202 other downstream 295112 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 718045 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 719104 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1021959 12634856 ~ 12640227 (-) True G104749
TU130955 other downstream 1113193 12548289 ~ 12548993 (-) True G104715
TU131247 other upstream 8415 13676131 ~ 13679262 (-) True G104929
TU131382 other upstream 328484 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 399499 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1702686 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1831818 15499534 ~ 15502133 (-) True AMCG00011251

Expression Profile