RNA id: TU131311


Basic Information

Item Value
RNA id TU131311
length 332
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G104980
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13858651 ~ 13858982 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGGGCTTGCGAGCGCAGGTCATTGTAACGCGGTGGAAACTATAGGGAGATTAATTCGGGAACAACTGAACATCAATCAATCGCTCGTAGATCACAGTTCCAGCATCTCGAAGCGCTTGCCTCGAAACCGGGTAACAAGAAAGAGGCGAGGAAGTccaaatacaatgtaaaatacaatgtgttaaTAGTTGTGACCTATGTATAAGATATGTGACTGCCAATATGTCTTGGTGCGCAGAGGAGCGCTTCGCACGCAGTGTGCCTCTGTAGTGACAGAGAGCAGTGTTGgagaggggaagaaagaaaaaaagatgcaCATTAATAAGTCAAT

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131310 lncRNA upstream 459 13857831 ~ 13858192 (+) True G104979
TU131220 lncRNA upstream 179271 13665947 ~ 13679380 (+) True G104923
TU131222 lncRNA upstream 179271 13665947 ~ 13679380 (+) False G104923
TU131203 lncRNA upstream 303595 13553401 ~ 13555056 (+) True G104910
TU131175 lncRNA upstream 629235 13186948 ~ 13229416 (+) True G104883
TU131317 lncRNA downstream 9420 13868402 ~ 13876178 (+) False AMCG00011204
TU131374 lncRNA downstream 131973 13990955 ~ 13992845 (+) True AMCG00011210
TU131391 lncRNA downstream 154139 14013121 ~ 14061024 (+) False AMCG00011209
TU131405 lncRNA downstream 203718 14062700 ~ 14063157 (+) True G105046
TU131410 lncRNA downstream 211418 14070400 ~ 14070969 (+) True G105051
AMCG00011202 mRNA upstream 3807 13851441 ~ 13854844 (+) True AMCG00011202
AMCG00011197 mRNA upstream 116644 13722539 ~ 13742007 (+) True AMCG00011197
AMCG00011196 mRNA upstream 136990 13707524 ~ 13721661 (+) True AMCG00011196
AMCG00011199 mRNA upstream 161943 13691836 ~ 13696708 (+) True AMCG00011199
AMCG00011195 mRNA upstream 167288 13687256 ~ 13691363 (+) True AMCG00011195
AMCG00011201 mRNA downstream 5633 13864615 ~ 13867345 (+) True AMCG00011201
AMCG00011204 mRNA downstream 9355 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011205 mRNA downstream 32772 13891754 ~ 13900038 (+) True AMCG00011205
AMCG00011206 mRNA downstream 50750 13909732 ~ 13914186 (+) True AMCG00011206
AMCG00011210 mRNA downstream 126683 13985665 ~ 13991927 (+) False AMCG00011210
TU131073 other upstream 915569 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1239596 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1331620 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 1791314 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 2014562 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 760708 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1461798 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 1991664 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 1994782 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 2104358 15963340 ~ 15984079 (+) True G105373

Expression Profile