RNA id: TU131342


Basic Information

Item Value
RNA id TU131342
length 2748
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G104998
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13864521 ~ 13867615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACAATCCCTCCTTCTGCATTTGATCAATAACCTCTTATTCAAGAGCACTTTTGAAAACTCACCATTGCCTTCTAGCCTGTGTTTGGGTATAAGGTAAACCCTTTACCAGAGCCCTCCCAGTGAAGTCTCTCCCACTTGGGCTGCCTGCAATTCTGAGATCCTTTAGTGTTTTAAATTCTCACAAGTCCAAAGAATTTCAGTAATGACACAGACACTTCCTtccttttttgatttttttttttacagtcttttattgtttttaccaAAACGTTGGTCATTTCACTCCTGCATCTTCTCAATGGTCTCCTCCTTGTATTTGCCTTTCTCCTTGCCATCCTGGCGAGACTTGGCTTTGCGTTCCAGGATCTTCTTGCGATCCTTGTCCAGCTTCAGCCTGGTGATCACCACCTAGAAAGAACCGCACAGACCGGTCAGACACGCGTGCCATTGCCGCCCGGATCTCCAGGTCAGACCCTCATGTGCATATTGTGGACACCATACACAACATACTGTGCGGAAACAGTTCTTAAAGGAATCCCGGAATCTCGACTATAATAAAATGCACTGTTTGGAGATTAAGCAGTGcccaattaaaatgttagagATGCCTCATTCTTGCAGGATGCTTTTAAGTAGCTACTCTATTCCAAACTGCACAAACTCTCAACCGATACAAAGTGTATTTAAACTCTGTTCAAGGGCTACAAACATCTAAAGTTTCACAGCAGAGTAAGTAACTGCAGAAATAACAATTACAACTTCATGAGGCAAGGATAATTACTAAATCTCTTAGCGTGCCGCTCACATTCATCTCATGCTGACAGAAAAGCACAAACCGTTTcagctctggaaaaacaaagcacCTGCATGCAACAGAAAAAGCAGAACGGAGAGAGGGCACCTTTAAAAAAACTGCCAGGATAACTAAAGCACAGTCCAATTTGCTGCAATCAACTTGGGAAGACATTCATTACAGATCTACTGCAGAGAACAGACAATAGACCCATCTTTCAGTGAAGCCGAACTGAGGATTAATGCCAAACATTTACAGGTTAAGAAACGGGcagggggtggaggaggagacCGCGTACCTTGCTGGGGTGGATGCCAACATGTACTGTGGTTCCGTTGGCCTTCTCTCTCTGCACGCGCTCAATGTAGATGACGTACTTCTTCCTGTACACCTGAACCACCTTCCCGATCTGCTGGCCTTTGTAGTGGCCACGGACAACCTGCTGGACCTCGTCGTCCTTGCGGATGGGCATGGAGCGCACGTTGTACTTCTGCCGGAGCTCCTTGGACAGGGGAGATGACATGATCTTCCTGCGGATGTGAGACGGGGCATTGAAGTGTCTCTTGCGGTTCTTGCGGCGAGACGACGTCACAAACGGATTGAGCTTCATGATGGCTGTGGGACGGAGGAGAGAGAAGTCAATACAATACAGGTTTGTTCATACAATACAAAGAGGCTCATGTTGTACACCACCAACAAACTACACCAGATTTCAAACTGCTGGAGCCAGCTGTAATAACCAGGTGAAGACATTACACTGAATAGCCTGAATGAGACTCCCCTGCTGTAAGTTTGAGGCATGTCAGGTACCTCCAACTGCAGTCTCAAAGTCGACCCTAGGCTCTGGGAATTTCAAGGCCTACCTTGAGTACATCTGCACATACAGACACCCTTTCAATAACAGCCTGCAGTTTTTGTTAGCGATACACCAAGATCCTGAAGCTcacaaaacaggaaatggaTCAAGACAATACTGTGCCAGATAGATGTGCAATCCAACGACTGTGGCCCCATTAGTGTCCAAAACCAACTGTCTACATACCATTAAATACGACACTTGGGAAGTTAGCTGGCTATTACAACTGGggtgaaacaaatgaaaactacaCCGCTTTCCTGAAACTAACAACAACACACCCAAAAGCATCACTGCTGCGTTACATATCACctaaatataatgaaaacaaggcctgtatgttttaagaaataagCAAATGAGAATAACATCTGCACATCACATGCTTAACACAAACGGATTGTTTTAGGGATTTAAAACAAGATGTACCAATACAGAACCAAAAACGAAGCTTACAACCTGGCCGTGCTCAGACATATTGCCAAATTAAAGCGTCCAACACGAGGTAACCATCTATCCAAAAGTATCAAATCAACCGACACAAGGCCTGGATCTGTCGTTTTTATTGGCCTCCACTAACAATGAATCAACCTCCACAACACTTTCAGCTCGTTTTTTATAACTAGTTTTGAAATAACGAAAACAGGCGGAACTACCTGGGAAAACCTCTCCAGCTAATGAACTCGTTTAATGCTGGGTAGCTGGAGCCTGGTGCCATTctgggttttattatttattggaaaCACAAAACGCTATTTACGTGCAAACGGGGTGTTTCTACAACGATATTTAAAGCCTACAGTAACACATAGAATAAATGCAGCCCCCGTCTCCCACCACAGGCCGACCCAGACTTTCACCAGGGCTGATCAGTTTGTGTTTAACTACTCATCTCTTGACAATAATGGCAGTACAGCACTCATCACATTCCCCATTTATCAATACGAGGGGTACAGTGCGGTGCCCGGTCGAACAGACCAGGATGGCCACAGATAACTTTGAAGCAATTTCACTCCAGCAGATCTTACCCTGCCGATCAGTCCACTATGGCCGCCGGAAAAGAGAGTTTAGAAGCACTTCCGCTCACATTAGTTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131246 lncRNA downstream 185259 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 196805 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 309447 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 486222 13378057 ~ 13378299 (-) True G104916
TU131208 lncRNA downstream 487524 13376133 ~ 13376997 (-) True G104915
TU131407 lncRNA upstream 197726 14065341 ~ 14065908 (-) True G105048
TU131411 lncRNA upstream 202789 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 331212 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 351340 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 552086 14419701 ~ 14420053 (-) True G105105
AMCG00011203 mRNA downstream 6251 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 85764 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011200 mRNA downstream 119296 13743918 ~ 13745225 (-) True AMCG00011200
AMCG00011194 mRNA downstream 176817 13684634 ~ 13687704 (-) True AMCG00011194
AMCG00011188 mRNA downstream 521057 13328493 ~ 13343464 (-) True AMCG00011188
AMCG00011208 mRNA upstream 52053 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011207 mRNA upstream 71744 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011211 mRNA upstream 126368 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011216 mRNA upstream 344010 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 597542 14465157 ~ 14467077 (-) True AMCG00011222
TU131247 other downstream 185259 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 497447 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 920380 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 921439 12942391 ~ 12943082 (-) False AMCG00011174
TU130995 other downstream 1224294 12634856 ~ 12640227 (-) True G104749
TU131382 other upstream 128585 13996200 ~ 13996589 (-) True AMCG00011211
TU131409 other upstream 199600 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1502787 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1631919 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 2095723 15963338 ~ 15973872 (-) False AMCG00011259

Expression Profile