RNA id: TU131407


Basic Information

Item Value
RNA id TU131407
length 568
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G105048
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14065341 ~ 14065908 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGCTTTCCTGCATGTCTTCCCTGGTCTTGGGGATCCCTGCTGTCCTCCCTGGCCGAGGCCCGGCTTCTGCTCTGCGTTTTCACACAACCCAGCTTACGTGCGTTTCGCGGGAAGACGAGCCTCACTTTGAATTTTCCTTTACTCTTAGGGTGTTTTTTCGGTCGTTTAGCGCCCATTCCCGCCTCAGCTGGGGTTGTGGTGGACAGGACAGGGGACATATCACGCTGTGAACTAGTCTTCCGGGGAAGGGGAATCGTTTTGTTGGCTGTTTTTTCTGCACGGTGTTTCTTGTTTGCCCTGGCCTTTCGGGTGGCGGTTTCTTCCGTCTCATTCCGGGCCTCTTCTTCGCGGTTGAGCGGAGCCGGAGATGCGGCCTCCTGGACCGGGGCCCTTTTCTTGCTTCTCATCGCGCCCCCGGTTTCATAAACGAAGGAGTCCGAAGAGTGTCTGCCAAACTGGCCAACATACACCACCCTGAGCGGCTTGGGTTTGGTTTTGACCATTTCACACCTGAGCCTCTAACGCACTATCTCCATTACATAGTTTCTCCGCAGTTCCTGCTCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131342 lncRNA downstream 197726 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 386079 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 397625 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 510267 13553440 ~ 13555074 (-) True G104921
TU131209 lncRNA downstream 687042 13378057 ~ 13378299 (-) True G104916
TU131411 lncRNA upstream 4496 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 132919 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 153047 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 353793 14419701 ~ 14420053 (-) True G105105
TU131470 lncRNA upstream 361511 14427419 ~ 14434667 (-) True G105107
AMCG00011211 mRNA downstream 68991 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 118793 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 142674 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 207071 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 286584 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011216 mRNA upstream 145717 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 399249 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 416462 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 480163 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 583470 14649378 ~ 14676424 (-) True AMCG00011231
TU131382 other downstream 68752 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 386079 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 698267 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1121200 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 1122259 12942391 ~ 12943082 (-) False AMCG00011174
TU131409 other upstream 1307 14067215 ~ 14068561 (-) True G105050
TU131692 other upstream 1304494 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1433626 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1897430 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1897544 15963452 ~ 15973872 (-) False AMCG00011259

Expression Profile