RNA id: TU131409


Basic Information

Item Value
RNA id TU131409
length 689
RNA type TUCP
GC content 0.45
exon number 4
gene id G105050
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14067215 ~ 14068561 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTATCAGACCTCCACCAGAATATTAATAATTCTCTCTCTATGCTgattagttgttttttgtacatATTGTAGCAAGCCGCTGCAAGATGGGTGAAGATGTTTTCAGCTTTCCACATGAAAGAGATCTGACACCCACAAAGAAGCCTGGAGTGAAACATGCTGTTCTCAAAACAATATCTAAAATGCTGcaagaaaatgaatgcattagaAGAAGGCTGATAACTAACAGTCAGCTTGGCCACACAGATCACAGaacagtggaagtgcatgatGCCAAGACAGTTTCCAATATGCCGGGGTGGATGCAGCCCGCGCCGACTGCCTGGGAGCTCTGCCTAGCTGACCACAGCCAGTGTTGTGTGGGCTCTGGAGACGGCAGGGGCTCCTTGTTGCTGGCTGGTCCCCTGCGGAGCTGCTGAGTCTGTCCTCTGTTTGACACTCaagctctgctgtttgtgttccAGGATTGCAGTCTTTAACCTgagacaaaacaatataaaagagAATAAAAGAGGAGACGTGTTGCTTTGTGTCTCACggcattgtgtttgtgtttgtacgATAATGAGATCACAATCTGATAATAAAACTGCAGATCTGCTTAGTCTGAAAGATGACTGGAAGTTGTCGATCTagtaatacagtgagggaaaaaagtatttgatcccctgctgattttgtacgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131407 lncRNA downstream 1307 14065341 ~ 14065908 (-) True G105048
TU131342 lncRNA downstream 199600 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 387953 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 399499 13662186 ~ 13667716 (-) True G104928
TU131214 lncRNA downstream 512141 13553440 ~ 13555074 (-) True G104921
TU131411 lncRNA upstream 1843 14070404 ~ 14070969 (-) True G105052
TU131436 lncRNA upstream 130266 14198827 ~ 14203536 (-) True G105077
TU131442 lncRNA upstream 150394 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 351140 14419701 ~ 14420053 (-) True G105105
TU131470 lncRNA upstream 358858 14427419 ~ 14434667 (-) True G105107
AMCG00011211 mRNA downstream 70865 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 120667 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 144548 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 208945 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 288458 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011216 mRNA upstream 143064 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 396596 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 413809 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 477510 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 580817 14649378 ~ 14676424 (-) True AMCG00011231
TU131382 other downstream 70626 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 387953 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 700141 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1123074 12943141 ~ 12944141 (-) False AMCG00011174
TU131119 other downstream 1124133 12942391 ~ 12943082 (-) False AMCG00011174
TU131692 other upstream 1301841 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1430973 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1894777 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1894891 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2889620 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile