RNA id: TU131410



Basic Information


Item Value
RNA id TU131410
length 570
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G105051
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14070400 ~ 14070969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cagcaggggatcaaatactgttttcccccactgtataattCTTCAGTTAACTTCAATAACCTGTGATGCAATAAGATGTGATGATAATGGGTGATTTCTGTTTGTAGTACCAGTCGTTCCCACTAATTGTATCTTTAATGATTGATGTAAGCCAATGATTTTGATGAGATACACTTTGCGATGCAACCTGCCAGAAGGTATCTGtgctaaatattgttttgtttgtttatttgcttaaCTAGGAAGGACCTCTGTTTGGGTGGGTTGACGGGAACGGAAGTAGTAGAATCTGATGCAAAAGGAGTCGTTTTGCTCTGGTTCATGTTTTCTCACTGTTCTGATACATACTGTTCTTGCAtttctgttgttattttctgaatattgtCATGTTAAACAACGATGAATGTATGTGTTCTCTTCTTAGAGagaaatatgtgtaaatatattttctaatgatCTTGTATGTAATCTGTTAGATTCACTTATATACTCAGTGGATTGTTCTGTTGGGATTTAGggatatgcaaataaaaaaataaaattgttttcaattgtgTTGTGAAAGTGTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131405 lncRNA upstream 7243 14062700 ~ 14063157 (+) True G105046
TU131391 lncRNA upstream 9376 14013121 ~ 14061024 (+) False AMCG00011209
TU131374 lncRNA upstream 77555 13990955 ~ 13992845 (+) True AMCG00011210
TU131317 lncRNA upstream 194222 13868402 ~ 13876178 (+) False AMCG00011204
TU131311 lncRNA upstream 211418 13858651 ~ 13858982 (+) True G104980
TU131438 lncRNA downstream 147981 14218950 ~ 14262016 (+) True G105078
TU131476 lncRNA downstream 385133 14456102 ~ 14459018 (+) True G105113
TU131518 lncRNA downstream 593651 14664620 ~ 14665153 (+) True G105143
TU131519 lncRNA downstream 599750 14670719 ~ 14670928 (+) True G105144
TU131520 lncRNA downstream 600329 14671298 ~ 14671549 (+) True G105145
AMCG00011209 mRNA upstream 9373 14037104 ~ 14061027 (+) True AMCG00011209
AMCG00011210 mRNA upstream 78473 13985665 ~ 13991927 (+) False AMCG00011210
AMCG00011206 mRNA upstream 156214 13909732 ~ 13914186 (+) True AMCG00011206
AMCG00011205 mRNA upstream 170362 13891754 ~ 13900038 (+) True AMCG00011205
AMCG00011204 mRNA upstream 192118 13868337 ~ 13878282 (+) True AMCG00011204
AMCG00011212 mRNA downstream 1399 14072368 ~ 14076417 (+) True AMCG00011212
AMCG00011213 mRNA downstream 24186 14095155 ~ 14096053 (+) True AMCG00011213
AMCG00011214 mRNA downstream 125566 14196535 ~ 14196906 (+) True AMCG00011214
AMCG00011217 mRNA downstream 216787 14287756 ~ 14305622 (+) True AMCG00011217
AMCG00011215 mRNA downstream 295471 14366440 ~ 14379806 (+) True AMCG00011215
TU131073 other upstream 1127318 12942380 ~ 12943082 (+) True G104815
TU130962 other upstream 1451345 12610129 ~ 12619055 (+) True G104719
TU130924 other upstream 1543369 12525360 ~ 12527031 (+) True G104694
TU130727 other upstream 2003063 12066494 ~ 12067337 (+) True G104550
TU130558 other upstream 2226311 11842129 ~ 11844089 (+) True G104435
TU131514 other downstream 548721 14619690 ~ 14620534 (+) True G105139
TU131632 other downstream 1249811 15320780 ~ 15322425 (+) False AMCG00011241
TU131792 other downstream 1779677 15850646 ~ 15852389 (+) True AMCG00011253
TU131793 other downstream 1782795 15853764 ~ 15855784 (+) True AMCG00011252
TU131803 other downstream 1892371 15963340 ~ 15984079 (+) True G105373

Expression Profile