RNA id: TU131436


Basic Information

Item Value
RNA id TU131436
length 4710
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G105077
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14198827 ~ 14203536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAAACCATAACCTTTGCAATAAaaaacagctgtttgtttgtaacaaacataatcacaataataacgCTGGTAgacatagtagtagtagtaataataataataataataataataataataataataataataaaaacactggcCTGTGCAACATCAAAGGTGGTTGTGTAACAAAGGCACATTTCATTAAGTTGAATGGCAGCCAGCTCCTGTTCAGTAACTTTTGACTAATTTCCTCtttcaaattacaataattgttattatcattgttactcttttaaatgtgtatgactGCGAAGATATTCACATGAGATTAACTCTTTGAAGGCATGAACTGAGCCATGcaatgttttgaagatattcTTTAGGAAAGAAACTATAACTCTCTCACACTACagcttcttattttattttcagcttgACATCAAGATAATATTATTTCCGTCAGTTTGTGCACTGCTAATGtttaatgtgaaatatgtatGGCTTTTGATATGGTCCTGTATATTTGACATGGTAATTGCTTCACTTAAAGTAAATAGAATAATTTCTGATAAATCCAAAGTGCAGGGCAGTAAAAGCAAAGTATTTAACTTTTAACCTGctcagaaacaaaaaagaaaaattaataaaacctgtGATTCTCTTTGTAAATTCTTCTGTCTCTGCCATGGCATTCAACTAACATCATAACTGTTCCTAATTTACAGTAAAAAAGGAAAGGCTTTGTTGAGTGTTTAGAGCTGCTACCATACTGGAGAAACAGAAGGAGTTCATTAGTTTCCTTCATGTTCACAGTAGTGCTGGAGCTTTACTActgcaaatacattatataatgcaGATACAATTATATAGTTATCAGCAAGTGTGTCTATTGCACAAGCTTTTTTAGCCTGTCAAATGCTTGTCCATAGCTCTTAACTGTTGGTATCTGTGGCTACACTTTATtaatgcagtaataataataatctttcagAGGCACTTTGTCAAACACACAGGAGACGCTCTGAAGAATAGGGATGAAACCCTTGTGCTCctattctaattaaaatatcttgAATAACATGATTGTGTTTAGTTATGATGTATTGGAAATGTCATACTTTGTTGTAGTTACTGTTAATCTAGTTTCCCCCGAGAATTCAGAAACATTCACAGGGCTTTAATTCACATTACAGACAAACTGGTGTGTCAAAGGGCAGGGCTACTGGCCATAAACTAGACAACATGTTCATTTCACATCTGGCAAGGACAAGCTGGaacatttgatttggttttgtaaCTGCTGCAAGCTGgtccatattttatttatttatttatttatttatttatttatttatttattgtgttactGCTTCAAAcactgaatgcaaaatgtaagtTGACTAGTTGCTGACAACCTATtcaatgtttttctgttatggatatacataaaaaaaaaatgtttttgttttttttaatctagtgTTGAAAGAGAAAGtttttttaagagaaatgtataccagttttacacaaaataaacttaaaaatatagacttctctctctcattacatataataatatataaataataatatatacattacaggTATTGGTGAAAAACGCTATAACAAAGTTCATGTCATGTGGATTTACTGGTTACCATTTTAACATCACTTCTATTGGGTAGGACTGTGGAGGGAAAGGAGCCAAGAGGTCCTCGCATGACGTCAGCAGATATTTTTCTATCAActtctttgtttttcaccaGCAACCAATATATGTGGCCTACttagcaaacaaaaataaataaagtacacaaAACTGTTTGGGAAATTGTGATTCAGACATGACTCCCTTGAACTACAGAAATCCCAGTGAGCATTTCTCCACTTTCACAAACATCTAAGGATCTGCTGTTAATTAAGGAGATTGTTAAAAGGCTTCTAGAACTTGTAAGATGTGCCTCATTTTGATTAAAAGAAACCTCGTAAAGTGAGTGGTGCTTATTAATGATTTCCTCTTCAGATCAAAGGAACAGGGCAGTTCTGAGCAGTCCTAACAATAGCCACATAAAAGCATCCACCTCTATTGAGTGAGTGCATGATACAGGAGCCTCGCCATCTTCAGAAACACTTTGCACACCACAGTTATTAAGGCTTGTAAAGTGGTTTTCTTTTACAAAGGGAACGCATGAAGCTCTAACTTTATTACTCTAATTGTTGACCAAATCCACAAATATCCCCacttcaaatatttgtttctcaacgtttaaataaaacaaaagaatgcAGCCACGACCCTAGACaggaaaagcaaacacaaatgggaacgagagagagagaaaataatacaatgacaaATCCAACTGTATACTTAAACAGCTTTACTCTGCATCAAAGAATCTGTAGCTCATTGTTAGGAATATAAAAAAAGGGGTGTGAAATTAATCTGTGTTGCTCATTCCCTCCTGTTTCACGTCCAGACTCCACTGTTGTCATGCGCTGAATGGGCAACATGAAGAATGATCTGAGCATCTGAATGGCATTATTGATTCCCCGCTGGACCATACACGGGGAGCAGAGACTGGATATCATCACAGCTGAAAGCGTGACCAGTCTAGATGCCCAGGATGCAGACAGTTGACACACCCCACACATTCGGATTGCCCTAATTGCACCCATTAAACGCACCAACGACAGTCAAGCTCGCTGATCTGGATGCCagttaatttatacatttttacacaatatTGCAGCTTCACTACTGTCTTTGTGATAGAAGGTTGTAAAACTATACCACCTAAGTAACCCTTTATTAcgtttttctttaatgtaaaaatgctgCAAATTATTTGATTGTGAATTTAGTTGGTGTGTAATCAaggaaagtaaagaaaaatatgataACTTGcttcaaaacacaattttaatttaatgtcagatGAGAGGTaaggaagattaaaaaaaaaacatctttgctagctttttaaaaactgtacaaGACAACTCCTTTCAAAGGAGCAATTTAAGGGTAAAAATACtccaatatatatttgtaatttattctgaatatttgtacattttcatgtttaatctGCAtgctataaatacaaaacatcatCACCCAGATATACTTTTAGCATTCAGTTATAGAGAAAAAAAGTGAAGCAGAATTTAACTAGATTTTAAACCTGACTGCttcttacaaaatgtatattgccAAGTACTGGGTAATGAGATTGAGGCTCTGTCTCTCAGAATTAActttaatattgtataaatGGTTCTAGAGGTTTAAAGAAAACATCATACACAGTCATAAATGCTGTTGTTGATAGATAAGAAGCCTACATAAGAATAGTTGGTGCAAAGATAACATTATGGAAATGCTGCTTGAATACCATCTGCAAAACTGCTGTTTATATGATACTGAcaagataataataaagcaactaGAAGAAATACCAATAACTAAATATCAAGAATACCAATACCTTGAGTGTATAGTTTTagctctgcctctctctctctctctctctctctctctctatatatatatatatatatatatatataaataaataaagaaataaattcaGGCGATTTTGTTTATAGCAGTATAAGAGTACCTGGATGTTTCTCACAACAAATGATCAACAGGGGTCCGGTAGAATTTAAGACAATACCACCTAAGGCGGTAACGCACCCGCTTCTAGAAATCCTTACAATTAGCTGAACAATTATGAAATGCAGAATGTTCTtggttaaaacaataaataaaataaaaactgaatgaatAATTGTGATACGTGAATATGCTCATGAACCTGGCCATATTCACTGtgcgaaaaaaaaaatctaaactaaaaaGATTGAAACTTTCAACTACTTCAATGCAGCGATATAGGGTTTCTGTGTTCTCTTGTAAACAACGTCTGCCCATATCCCATCTTCACTCGatgattttcatttaattaattacacttGTGACAGTCAGTCCCATTTGTGAAGGTGTGGtttggttgttttcttgttttccatttttggaAGCgtgtaggcctatgtattttCTACCTGTGTCTATTATATATGATCAGTTTGTGTGTGACTGCAGAACCTGGAGTTCAGTTCAAGGCCCCAGACAATGGCACCTTGCCTTTGGTAGGTTTTGTATTTATGTCATGCAGGAAACATCAAAATAGAAACTCTCTCAAAGaacaacaaaattgaaaaatccACAAAACCAATCTTGTATTTCGTCTCTGCCAACCCTCCCCCCTAGCCCCTGTCTCAGATCAATTTCATGATAGATGGTACATGCTATATCCAACAGGAGCTGCGTAAAGTCCAACTGGAGACACAGGAAGCATAGGCCGGTGGAAAGGATAGGACTGTCCGTAGAGGGAAGCGGTCTGGAGCGGGGAGCTGAGGGGGAATGGTAACGTGAAGCCGGGGTGCAGCATGGGCTTTGTTGccattttcagtttctccagCTCGGCCTCCTGCAGTCTCTTGGCCTTGGCTCTCCGGTTCTGGAACCAGATTTTGACCTGGGTCTCGGTAAGGTTCAGGGAGCTGGAGAACTCGGCCCTCTCGGCGATGGACAGGTACTGCTTCTGACGGAACTTGCGCTCCAGTGCCAGCAACTGCGATGTGGTGAAGGGGGTCCGGGGCTTCCTGTTGGTTTTGTGCTTCCTCAGGGAGCAGGTCGTAGGGCTCAGCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131411 lncRNA downstream 127858 14070404 ~ 14070969 (-) True G105052
TU131407 lncRNA downstream 132919 14065341 ~ 14065908 (-) True G105048
TU131342 lncRNA downstream 331212 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 519565 13665795 ~ 13679262 (-) False G104929
TU131241 lncRNA downstream 531111 13662186 ~ 13667716 (-) True G104928
TU131442 lncRNA upstream 15419 14218955 ~ 14261910 (-) True G105080
TU131467 lncRNA upstream 216165 14419701 ~ 14420053 (-) True G105105
TU131470 lncRNA upstream 223883 14427419 ~ 14434667 (-) True G105107
TU131475 lncRNA upstream 243802 14447338 ~ 14449781 (-) True G105112
TU131557 lncRNA upstream 685690 14889226 ~ 14889437 (-) True G105176
AMCG00011211 mRNA downstream 202477 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 252279 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 276160 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 340557 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 420070 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011216 mRNA upstream 8089 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011222 mRNA upstream 261621 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 278834 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 342535 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 445842 14649378 ~ 14676424 (-) True AMCG00011231
TU131409 other downstream 130266 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 202238 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 519565 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 831753 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1254686 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 1166866 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1295998 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1759802 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1759916 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2754645 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile