RNA id: TU131442


Basic Information

Item Value
RNA id TU131442
length 423
lncRNA type intronic
GC content 0.44
exon number 3
gene id G105080
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14218955 ~ 14261910 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTACCTGaacattgtttctgaccatgtccattcctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattgttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttccgcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtatatatatagatacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131436 lncRNA downstream 15419 14198827 ~ 14203536 (-) True G105077
TU131411 lncRNA downstream 147986 14070404 ~ 14070969 (-) True G105052
TU131407 lncRNA downstream 153047 14065341 ~ 14065908 (-) True G105048
TU131342 lncRNA downstream 351340 13864521 ~ 13867615 (-) True G104998
TU131246 lncRNA downstream 539693 13665795 ~ 13679262 (-) False G104929
TU131467 lncRNA upstream 157791 14419701 ~ 14420053 (-) True G105105
TU131470 lncRNA upstream 165509 14427419 ~ 14434667 (-) True G105107
TU131475 lncRNA upstream 185428 14447338 ~ 14449781 (-) True G105112
TU131557 lncRNA upstream 627316 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 666891 14928801 ~ 14929049 (-) True G105187
AMCG00011211 mRNA downstream 222605 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 272407 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 296288 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 360685 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011198 mRNA downstream 440198 13752553 ~ 13778757 (-) True AMCG00011198
AMCG00011222 mRNA upstream 203247 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 220460 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 284161 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 387468 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 426269 14688179 ~ 14701429 (-) True AMCG00011229
TU131409 other downstream 150394 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 222366 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 539693 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 851881 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1274814 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 1108492 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1237624 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1701428 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1701542 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2696271 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile