RNA id: TU131475


Basic Information

Item Value
RNA id TU131475
length 2418
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G105112
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14447338 ~ 14449781 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGATTGCAACTGACGTTTATTCAGGAAAAATTCATACAACCATGTAACATTTCATTGGTTTATGACCTGCTTGTTTCGGGAAGCTgaaacaacagtaaaaaaaaaaaaaaagaaaaaaaaaaaggagtaataactaatataaatataataagcaCTTTTATGGTTCGTGAATGCagcattgttgtgtttttgttttttgttttgctttactcACTATCTACTACCTTGCACTCTTTGCTCAATGTGATTGGGTTTCCAAAAAACTGCTTTGCAATTCAATTCAGTGACTCAAAATGCTTTGAATCACAGAAACATACAAAACTTTTGATCTATGTTCAAATGGAGCCTAAACAATACAGAATGCACAGGGTTTATGAGTTTAAATCTCCACACAACCCATTGTTTGTGACTGCAAGCCTTCATCACATGAAATATTATCAGTGATAAAAGCACTGTTCTGTGAGCTGTTGGATCCCTTCAGACCTTCCTGTGCTGTTCTATTTTCACTGAATTGTGAATCCCTTTCCTTACTTCATGAACTCCCACATGCTTCAAAGAGTTAAGTATTATACCATGTAATCCCCTCACTTTCTCACACAATTTTGTTGATTTTCTGGGAATCAAATTACTTTACCGTAGGAGAGGAGGGCATAAATAAAAGGCCGAATGCAATATGAATTTGGagttttacctttttaaagCTACCCGATAGCAGTTGAACTGAGATTTTCATAATGCAGGAAAAACAACTTTTCAAATGcttactttttcacatttcacactaTATGCTCAATGTAAGATTTGACAAGGTATTAGGTACAAGAGCGGGTAATAACAAGCCAATGCAAAAGACAAATGCCTACAATGAACACCCAGGTAAACAGCgtttgggaaaataaatcaacttttcataaaataatgtgttcttGCATGTTTACAAAATCTGTATACCACAAACATGTTTCCCCCCCCcagatttttcttatttttatgtttaattcattAAGCTACCAAATATTCCTGGTTAATTAGCCCAAGGATATATGCAACCACTGGTTTAACAAAGCTACATTACATCTATGACTCACAGCGCCACCTATCTAGTATTGATGGTATTGTATGTTAACATTGCTATGGACTATTGCAAACTAGtaattcttaaaagaaaaaaatgacactGAAAGCTTAGTATCAAAAAGGTTCAAAGCAACATTCTTAAATATGCAGTATTCCTTTTAATAGAAAGCAAATCATCAGACAAGAAGGAAACAACCCGAATGCTGAAGAAAGTAATTGGTCTGTGCTCTCCTCATCACAGTGACTTGCAAATGACTAATGTGAATCATTTAGCATCAAAGCAccagttaaaatataatttgaagcaGGATTTCAGTAATCAATTAttgaaaaccaaacacacacacacacacacacaaataaacaggctGCCATTTTACATCATCAGGAGATAAAGATAGAAACACTCAGAAAACAGTCACTACAATTATCGCTAATTAGGCTCTACATCATCATGTTGTACAGCCTGGAGTCTTCCTGAAcccgtacacacacacacacacacacacacaccttgcttCCCCTCATAGTTTGTAAACATCCATTTATATGCATGTAGTTGTAGCAAACGAAACATTAAGAACACACTTAAATTCAAAAATGCAAGAAATGTAAGTTTGTACTGACTGACTTCGTTTACTGGTTTTAGTGAAGCAACTGTCCAATCTGAACTTTTACTCAAAACAACCATCAAATTTTGTAAACTTCCAACGAGAAACAATCTTATaagaaaaatgtactgtttttatttcagtgtctTTCAGGCTAAAATACGGGAAATAGGGATGCAGCTGTggttcacattttaaaataatttctcgTGCACCCTAgtttgtctgttgttgtttggcCCCCAAAGTTGTTCTACCTCCCACCATTATTCACATAAAGCAGTTTCCCAAATTCTGATTTATGATTTTGTAAACTATACATTTGTATagtctgaagaaaataaataactaacatGCTATAGAGAAAGACACTGGTCTGGAAACCATAAAATCCTctctggtgtgtttgtgtgagaaataCAGTTTGGTCCGAAGGATAGTAATGTTATGGATGGTTGAAGTTTTCCTGCGCGCAACGTTTAATGgtttaatgtgttatttccATCATTAGGCTGGGCCTTCTAAAGAAAAGGAATACTGCATTCTTAAAGCTATAGCAGGTAGCATTCGTGATTGGTAAGGCATGAGgcttctgtgttttgttcaaTTTCAACTTAAACCAATCATGTTTCCTTCCCAAGTAGCTCTGTTAATTGCTTTAGCTCAGAGATGTAATATTGGAGCGGCCACCAGGGGGCACCACAATGCGGCGCCCTGCAGGTCGGATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131470 lncRNA downstream 12671 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 27285 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 185428 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 243802 14198827 ~ 14203536 (-) True G105077
TU131411 lncRNA downstream 376369 14070404 ~ 14070969 (-) True G105052
TU131557 lncRNA upstream 439445 14889226 ~ 14889437 (-) True G105176
TU131570 lncRNA upstream 479020 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 604635 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 669426 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 783922 15233703 ~ 15300851 (-) True G105249
AMCG00011216 mRNA downstream 106598 14211625 ~ 14340740 (-) True AMCG00011216
AMCG00011211 mRNA downstream 450988 13993983 ~ 13996350 (-) False AMCG00011211
AMCG00011207 mRNA downstream 500790 13939359 ~ 13946548 (-) True AMCG00011207
AMCG00011208 mRNA downstream 524671 13919668 ~ 13922667 (-) True AMCG00011208
AMCG00011203 mRNA downstream 589068 13856857 ~ 13858270 (-) True AMCG00011203
AMCG00011222 mRNA upstream 15376 14465157 ~ 14467077 (-) True AMCG00011222
AMCG00011223 mRNA upstream 32589 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011230 mRNA upstream 96290 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011231 mRNA upstream 199597 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011229 mRNA upstream 238398 14688179 ~ 14701429 (-) True AMCG00011229
TU131409 other downstream 378777 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 450749 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 768076 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1080264 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1503197 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 920621 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 1049753 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1513557 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1513671 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2508400 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile