RNA id: TU131557


Basic Information

Item Value
RNA id TU131557
length 212
lncRNA type intronic
GC content 0.38
exon number 1
gene id G105176
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 14889226 ~ 14889437 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGAGTTGCCTTAATAGCATCTCGGGTTTCTGAATCATTATCATTGctattgccttttttttttttttttcccctccagaaaataaatctgcacaTTGAATCTTGGACAATTTGGAGTAGCAATAGTCCGTCTTCTTCAAAAGATGTCACATCTACAAGCATGGGTCTGAAGAAGTAGACGGATTTATTTTGCTGGTCACAAACTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131475 lncRNA downstream 439445 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 454559 14427419 ~ 14434667 (-) True G105107
TU131467 lncRNA downstream 469173 14419701 ~ 14420053 (-) True G105105
TU131442 lncRNA downstream 627316 14218955 ~ 14261910 (-) True G105080
TU131436 lncRNA downstream 685690 14198827 ~ 14203536 (-) True G105077
TU131570 lncRNA upstream 39364 14928801 ~ 14929049 (-) True G105187
TU131596 lncRNA upstream 164979 15054416 ~ 15054817 (-) True G105213
TU131604 lncRNA upstream 229770 15119207 ~ 15119433 (-) True G105221
TU131635 lncRNA upstream 344266 15233703 ~ 15300851 (-) True G105249
TU131651 lncRNA upstream 409208 15298645 ~ 15322712 (-) True G105261
AMCG00011232 mRNA downstream 55584 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011229 mRNA downstream 187797 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 212802 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011230 mRNA downstream 313198 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011223 mRNA downstream 399645 14482370 ~ 14489581 (-) True AMCG00011223
AMCG00011239 mRNA upstream 190947 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011238 mRNA upstream 346188 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011237 mRNA upstream 357755 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011245 mRNA upstream 393140 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011246 mRNA upstream 438899 15328336 ~ 15346964 (-) True AMCG00011246
TU131409 other downstream 820665 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 892637 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1209964 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1522152 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 1945085 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 480965 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 610097 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 1073901 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 1074015 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 2068744 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile