RNA id: TU131604


Basic Information

Item Value
RNA id TU131604
length 227
lncRNA type intronic
GC content 0.47
exon number 1
gene id G105221
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15119207 ~ 15119433 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttgaatcaagtccccatgtagtctcctctgttccagggtgaaaaggttcagttcctcagtctctcagtaagacattcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcgatatctttcttgaagtgtggagtccaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131596 lncRNA downstream 64390 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 190158 14928801 ~ 14929049 (-) True G105187
TU131557 lncRNA downstream 229770 14889226 ~ 14889437 (-) True G105176
TU131475 lncRNA downstream 669426 14447338 ~ 14449781 (-) True G105112
TU131470 lncRNA downstream 684540 14427419 ~ 14434667 (-) True G105107
TU131635 lncRNA upstream 114270 15233703 ~ 15300851 (-) True G105249
TU131651 lncRNA upstream 179212 15298645 ~ 15322712 (-) True G105261
TU131695 lncRNA upstream 253914 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 266283 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 272299 15391732 ~ 15396392 (-) True G105298
AMCG00011233 mRNA downstream 228902 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011232 mRNA downstream 285565 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011229 mRNA downstream 417778 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 442783 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011230 mRNA downstream 543179 14546071 ~ 14576028 (-) True AMCG00011230
AMCG00011238 mRNA upstream 116192 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011237 mRNA upstream 127759 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011245 mRNA upstream 163144 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011246 mRNA upstream 208903 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011244 mRNA upstream 241883 15361316 ~ 15364890 (-) True AMCG00011244
TU131409 other downstream 1050646 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1122618 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1439945 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1752133 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2175066 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 250969 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 380101 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 843905 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 844019 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1838748 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile