RNA id: TU131635


Basic Information

Item Value
RNA id TU131635
length 1772
lncRNA type read_through
GC content 0.37
exon number 2
gene id G105249
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15233703 ~ 15300851 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taataatgaataatNNNNNNNNNNNNNccccccccccccctttccagcaaagcaaaacatttgaaatgcacgATTAGGGTAAACTTACAAAACGGGCAACTGCAGATTTAATTGTGAATTGGACAGTCTTTAGGTTGTCTTGATACCCCCCTGCAGTATTTTTCCAAAGAAGGTGTTCCTGAGAAGTGCTAAAACGTTGTGCTTTTTGTGGTGCTTCTGGCTCATTAATTCAAAGCACTTCTAGGACAACTTTTAATcccaacataaaaaaacaaggcaaacTAAAACGAGCCTCCAGGGATAAAAAAGGACACAGTTCATATTGAGGTTTAAATGTGAAGTgattgaaactgaaattgaTTCTAATTGCGGCATTTGCACATTTTGAGAAGTATTTTGCTATAATTACTTAATGCAGTGAAAGACGCGTTTtcttttgacattttctgttcaACCCTTGTTTATGGGTTGGAAATGAACCAGTTGTATGGTATTCCTGAGCATTTACCTTTACGTCTGACAAAAGGtggctttcattttctttcaatgcgttaatgtttttgaaaaagctCACGGAGGAACAGGCAGGGGAAACCCTGAATGTCAGTGGATGAAGGCttgcatttgtgtatgtatgttctcaGTTTAATCGGCACCgtgttttaatgtatgaatactTGGCACTGGTGATGGTTTAAAAGCAATAAAGTATTGAACCACCTAGGTCCTCAGTCCACTATGtggaagaggagggagaagggTTTTGTGATGACTTTAAAATCGTGAACCAAGAAATCGGGCCCAAAACCCTTACACTTCCAATCTAGGTAGCTGAACAATCGTAATGCACACTCCTACCCGAGGTTACTGtaacttattttttccttttctttccttcctgaAGTTGAGGAACTTATCCTTAATCTATATTTTTTGATCGAGCATGTACAGCCGATTTGTGGCCTACATCTCTTCACAAGTGCCCCGGTTTAATTAatggtttgtatttctgttctaGACCTTAACTACTTAAACAACCTGTTCTGGAGCACTTGAATCAAATCATGAAAAACTTGCTGGGCATAGTGCCATTTTAAGAagtcaatttcaattaaaggcTACATGCAAATGGTAACACATTCACTACTTATAGCATGTAGGTCACCCTTTATTTGATTACTTAAAACTGCATTGTcaaatgttacaatattgtATTAGGCATTCTTAAAACTGAAATGCGTATGGCTTAACGAATTGCAGAAAAGGTCTGTACTCTGCTTATTCATTGTTTCAAGCTGTGTTTTGGTGATAGTTTGAAAATTGTGGGATTTATGGATGTGGTACTTCTTGGAGACATGgcatacatttctaaaattgaTACTTTCTATCCTGCCTTCGTTCAGTATATGAACTAAGCCCTCACTGgccacatatatacatttagaatttagtgattttgtaaaaataaatgccccCTTCAGAATTTAACACACTGAATGCAAAGTGGAGCAAATACTGCTTTACTTCTAAATTTTCTATACTGTCATGGCAGGTTGTTACCATTGATCCATCAAATACCACTTTCAATTTCTTTGTAAGATGCAGTACTGAGTGAAAATGGTTTCTACTGTGAGAAATAAGACTGTAGAGTGCTTTTGTGCGCTTCATTTCTCGAGGACTGCAATCTGACTACTTTTTTCCAAGATTTGACctttcaataaaatgttattgaaatgtatgaacCTGGTTTGTGTTTATTCCAGCAGTTAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131604 lncRNA downstream 114270 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 178886 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 304654 14928801 ~ 14929049 (-) True G105187
TU131557 lncRNA downstream 344266 14889226 ~ 14889437 (-) True G105176
TU131475 lncRNA downstream 783922 14447338 ~ 14449781 (-) True G105112
TU131695 lncRNA upstream 72496 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 84865 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 90881 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 234519 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 731400 16032251 ~ 16035023 (-) True G105427
AMCG00011239 mRNA downstream 103660 15080384 ~ 15130043 (-) True AMCG00011239
AMCG00011233 mRNA downstream 343398 14884434 ~ 14890305 (-) True AMCG00011233
AMCG00011232 mRNA downstream 400061 14823524 ~ 14833642 (-) True AMCG00011232
AMCG00011229 mRNA downstream 532274 14688179 ~ 14701429 (-) True AMCG00011229
AMCG00011231 mRNA downstream 557279 14649378 ~ 14676424 (-) True AMCG00011231
AMCG00011246 mRNA upstream 27485 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011244 mRNA upstream 60465 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011248 mRNA upstream 142339 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 200150 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 501622 15802473 ~ 15937457 (-) True AMCG00011261
TU131409 other downstream 1165142 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1237114 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1554441 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 1866629 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2289562 12943141 ~ 12944141 (-) False AMCG00011174
TU131692 other upstream 69551 15370402 ~ 15373179 (-) True G105290
TU131737 other upstream 198683 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 662487 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 662601 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1657330 16958181 ~ 16961069 (-) False AMCG00011290

Expression Profile