RNA id: TU131679


Basic Information

Item Value
RNA id TU131679
length 2155
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G105282
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15385716 ~ 15404233 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGCAGCACATCTGCTATATAAGTGACATTTATTAGACATTTTGCTATATTTACAGtcttacacattttcatttttgacaATAAAAACCCCCAAGGTGCAGTACTACTTGGCAGAGAGTACAGAAAGTGGAACTGTTGCTTCTTACAATTTTGAAGAACTCTTCACACACAATTTTACATCAACTTATATCAGGAAAAGAATACACAGATCAAAGGGATAATCTAAGAAGGTCCTatctgggggggtgggggagatcTATCACAAAGTTGACATAGGCATTCCAAAACGAGagaaatgtttttcagttgcCATTACTATGAATGAAAGACCCCCTAACCGTGGCATGGATGTAGGATAgacatattttgcttttttcccccccaacgCCCACATTTTAACCACctcactataaaataaataaagtctaaAAGCCGTTGTCACTCCAGCATTGCGATAACACAAATCAACATCCCAAGAAAGCGTAGGATGGAGTCTTCTTACTGACGTGTACACAGGGGCGTGGTCTTTTTGAAATGGTCCAGTCAGGTCAGAAAGACATTGCAATGCATGCTGCAGTGAGATGGTTGAACGTGTggttgcacattttattttcacaatacaaCAGTGTTCAGATTTCAGCCGTGATGAAGTTTGGACCCACCACTAAACTATAATCTCCTAAATATATGTCACTATCACTCCCACCCCCCTATTCTTCTGTTGCGTTACTTGCTttctacaaaaatacaattgggAAGTGTTGTGTTAGCAGTGTGAAAGActagaaataaatgcatgtagTACTGCCTTGGTTTGCTTTcttcttctgaaaatgtaacTACTTGGAGCATTCCTCAGCATTACGGCCCGGATCACTGGGTTTTGTTATGCCGTGTATACTTAAGTCATAAATTTACCTGTGCAGTAAAATTAAAGTATTCTGTTCACAAACTTGAAGAAATTTTAGAAAGAGTAACTTTAATTTTATAACTTATATAACAAAACACTGGTTTCAAGtattttgaacaaaataatgtaaaccagTCTGAACTACCGAGAACCCCCCcattaatgtactgtaattcATAAGCAGCATAATGCTGCTTCCAAATCAATTagttttaacagaaaaaaaaaaaaaaaaaaaagagcaagaCTGCCCTCTACTGGCTAAAAAGGGCAAAGTACATGCTATTGAATAACTATGAACAGATAATATATAAGGCAGTATTCGTACATCACAGACTTGATTGCAAATAGCACTGAACATTAGCCACTAATGATTGAATGGTTACAGAATTTTCAGCATCCACTATTAAAATTTTACATCTAGAACCATATAGAAAGAATGTCTCGTCCTTAAACAGTACTGTGTTATTTAaagcagtgatttttttttttccttttgtcttcTGTGATCTAGGTCTCTTTTCACATCCTGCAGGTGCGCAGCCGATTTCTGATGgaattttttcttttgtgggttatttttttttttttttttttttttttaaaggcacattTATTTCAAGACAGGTCAGATAATTATTActacttaaaaataactaacaagCTTAAGGATCGTGACAGTCTACCTGACACTGAACGAAAGGACAAAAAGAGAATTTGAATTTTGAACCAAGAGCAATCCAAGAGTGCAATCTGAAAGCACAACAACCAAGaccattttttaattcacacaGTACTGAATGGTTACCTTGCCATAGCGATACAATTTAGATTACACATCTACCTTGCGAAGTTCATACTCAAAGGTGGTAAAGGTGTAAAGTAAAGGTGTTAAAAACCCAATTTCGGGGTCCTGGTTATTCAGATAATGAAGTGCTGTGGATCAGAAAGGGCAGACTCCTGTGAGTTCTGTGATGCAGCCCACTACAAAAATAGGGTATTTTCTTGTTAGATTTAGTGACCCAGATATCCCAGCAGAATTTGGTGTATTTTCTGCTGAAAAAGGCACCTGTGTGGCTGTCTTGTGTTATTTAGTCCATCAGGACTCTGGGAGATGTGCGTGGTGCTCTGGTTTCTCAGCCTTCAGTCGCTGTAGGGTTTCTCGATTATCTTTGCTGCATCGCTGCTTTTCTTCCCAGGGCTGGACAGGGGCTCCACCAGCTTGTTGTGTACCTGCATCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131695 lncRNA downstream 10953 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 63004 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 84865 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 266283 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 330899 15054416 ~ 15054817 (-) True G105213
TU131742 lncRNA upstream 131137 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 628018 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 639196 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 734866 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 831895 16236128 ~ 16237685 (-) True G105473
AMCG00011244 mRNA downstream 20826 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 38752 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 90211 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 113088 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 146991 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011248 mRNA upstream 38957 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 96768 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 398240 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 559132 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 570798 15975031 ~ 15977007 (-) True AMCG00011260
TU131692 other downstream 12537 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1317155 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1389127 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1706454 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2018642 13365083 ~ 13367074 (-) True G104909
TU131737 other upstream 95301 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 559105 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 559219 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1553948 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2325718 17729951 ~ 17733068 (-) False AMCG00011313

Expression Profile