RNA id: TU131692


Basic Information

Item Value
RNA id TU131692
length 993
RNA type TUCP
GC content 0.43
exon number 7
gene id G105290
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15370402 ~ 15373179 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGTTTTTGACTGGATTTCTTTCACTTTGACAACAGGTTCCAGTGTAAGGCTCGTCTTGTTCTGTTGGTTCATTTTGCTGTTCATCCAGATCATTGCATCATTGACGGTCTTGTCTACCTTGTCCATCTCTGCAGCGTCCAAGTGCTCGTATTGCTCCTCCTTGGTTTTGTAAGCTTCAACAATTTTCATGTATTGctggatttgttttccaaggTCTTCAAATGCTTTTGGTCTCTCTTCAGCCTCGAGGTATCGATCCTGGATGGGCTGACCAAATTTCTTTAGTTCAGCCAGTTTATCAATGTACACTTGTTTTGGTTGGTCCTCTCCATCTTCATACAACCAGTTTTCGGTATCCTCTAGTTTCAGTGAGAAAGTATCTCTGTCAGCCTCACTAACAAACTTCTCCAGGGCACCATGAAGCTTGTCTCTCATCTCATACACATACTCCTCCACGCAGTTCTTTGCGTCATTTCGTTCCTTCTCGAGTTTATCCTGCATGATCATCTTACCCTCATTTTCAACAAACAGGTTCAGCATATCATTGGCAAGCTGCCACTGCAGGTTGTGTTCAATTGGAAGGTCCACAGTCTTTGTTTTAACTTTAGGCTTTTTGGCCTGAGGGGGTTGATCAGTCTTCTTCTCCTGTTTTGGATCTTCTGGCGAGGTCTCCATTTCATCGGCCTCTTTCTTCTCTGCGTTTTCTTTCGGCTGGTTGTCACTTTGGGCTTTCTGATCTTCGTCAACTTGCATTGTGTTCTCTTCTTCCTTCACGTTTTGCTCCGTATCCATGGGCTCCTCACCCTCTTCAGATTTCTGCACCTCCACTAGAGAGGCACTGGACACACTGAAAATGCCATGGATGTTTACTCTCACTTTCACTTTAACCTTTGAACTCTCGCCAGAAGCCTGGGGAGTGACTTTCTGGACCATAAATTGACCTAGACAGAAGAGAGAAACCacattagtaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131651 lncRNA downstream 47690 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 69551 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 250969 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 315585 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 441353 14928801 ~ 14929049 (-) True G105187
TU131695 lncRNA upstream 168 15373347 ~ 15374763 (-) True G105291
TU131679 lncRNA upstream 12537 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 18553 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 162191 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 659072 16032251 ~ 16035023 (-) True G105427
AMCG00011244 mRNA downstream 5512 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 23438 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 74897 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 97774 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 131677 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011248 mRNA upstream 70011 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 127822 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 429294 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 590186 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 601852 15975031 ~ 15977007 (-) True AMCG00011260
TU131409 other downstream 1301841 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1373813 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1691140 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2003328 13365083 ~ 13367074 (-) True G104909
TU131118 other downstream 2426261 12943141 ~ 12944141 (-) False AMCG00011174
TU131737 other upstream 126355 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 590159 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 590273 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1585002 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2356772 17729951 ~ 17733068 (-) False AMCG00011313

Expression Profile