RNA id: TU131695


Basic Information

Item Value
RNA id TU131695
length 1383
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G105291
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15373347 ~ 15374763 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgatgcatttatttcacagttgtgaaataaaaatcatgaaTACAGTGATAGCAAACAAGCATCAAGAAAAAAGGACACGTCGTCACATTTCAGCTTTATCAATCCAGTTCAGATGTTACTTTACGATACAGAAACGGCAAACAAatctacaaaagaaaaaaaatcccgCCTCCACTTATTGACTCATTAATAGATCGATCTCAGCTGATCTCTTATCAATTCTCATTCTATAGACAAAAAATCCATTTAAagtcactgaagttaaaaataaaacaaacaataataactgTAGAACAGCTTTCCCCATAACCAAAAGATAAAGCCTTTAAATTTTATATCTGAATGTAATATTAGATTAGCTCCAATGTTCAATACATCAGAATTGTATAACTACTACTGTACAGGAACAAGAATTAACACTCTTTATTCCACTAGTTGGGATGTAACAAGACTTCTATTCATAAGCAAGTTTTTGCTTGGTGctcatacattttcaatgcTTTTAGTTTTTGGGTGACAAGAACATTAATCATAAATGCATCTGTagattcaaaacatttaaacatttaagcacAGTATTGAATTCtgatactgtatatatatatataaaaaaaaaaagattatgaaCTGTATGTTAAGACATGCCCTGAATTTCAGTACAATACAACTTGAGTGGGGGGGATGCAAGAAAACTTTAaatcaatttacaaaatgaGAGTACATTTATTCAATACCAGGCTCTCTCCTTTTAAATATTAGggaatctgtttttatttgatattagATATTGACACTTGTCTATTAATAATTCCCAGTGtaattatttgttaatattctttatttcaGGGCTCAAGCTTCTGAACTATTTTTTCCAAATAGTGGTACTGAAAACTGCAATTTATAAtactagcatttaaaaaataacagtataaaACACCGCATACAACTCAAAACTGTCAGACCATAAAGAAGGTACTTATATTCAGTgtttgtaatttgattttacAAGTCAATatatgcattgattttatatttttaatgaacgGAAAATCATGCCATGTCGGCCGCTGACAGAATTTATGGTAAAAGTAACATCAAATGGTCAAAATTCTATCGTAATATTTCTGATGCTTGTATAATCTGGAAGTTGCAGTAGTTTAAATTAGTCAATGTCCATCTCAGGCAGCTTGTTTTCTGTGGATTCTGGGTTGGGCTGGCCAGTGCCTTCAGCCTCTTTTGCGGTGCTGGCAGGTTGCTGCGCCTCTGTGCTTTCCTGTCCATTTACTGGGCCATTCTGTTCTGCCGCCTTCTGCTCATCCTTTGGGGGCTCCACTTTCGGTTTGGGCTTCATGACAATGGGATTGCAGGCAGAAGCAAGCTCct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131651 lncRNA downstream 50635 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 72496 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 253914 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 318530 15054416 ~ 15054817 (-) True G105213
TU131570 lncRNA downstream 444298 14928801 ~ 14929049 (-) True G105187
TU131679 lncRNA upstream 10953 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA upstream 16969 15391732 ~ 15396392 (-) True G105298
TU131742 lncRNA upstream 160607 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 657488 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 668666 16043429 ~ 16048522 (-) False AMCG00011271
AMCG00011244 mRNA downstream 8457 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 26383 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 77842 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 100719 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 134622 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011248 mRNA upstream 68427 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 126238 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 427710 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 588602 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 600268 15975031 ~ 15977007 (-) True AMCG00011260
TU131692 other downstream 168 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1304786 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1376758 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1694085 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2006273 13365083 ~ 13367074 (-) True G104909
TU131737 other upstream 124771 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 588575 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 588689 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1583418 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2355188 17729951 ~ 17733068 (-) False AMCG00011313

Expression Profile