RNA id: TU131703


Basic Information

Item Value
RNA id TU131703
length 300
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G105298
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15391732 ~ 15396392 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCATCCGCAGCAACCTGGGAGCTTTCTCCAGGCTCCTCCTCATTTGGCAACTGCTGGTATCGACTGGTTTGCTCAGCCATGCTGCGGTCAGCGGAAAGACTTAACAGACCTgtcttcagaaataaaatataaaaaataaatctgttgtttcccttttttgtcTTAAACTAATCAAAAGTATAATAAACCCTGTCTTAGGGCTTCGTGTTTCTCCGGAGTCGACGTGTTCCTCCCTTCCCTCCCCTGCGTCCCAAGCTCGGCTCTCTGTAATGGCTCGCTGCACTATACAAATGAAACC

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131695 lncRNA downstream 16969 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 69020 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 90881 15233703 ~ 15300851 (-) True G105249
TU131604 lncRNA downstream 272299 15119207 ~ 15119433 (-) True G105221
TU131596 lncRNA downstream 336915 15054416 ~ 15054817 (-) True G105213
TU131742 lncRNA upstream 138978 15535370 ~ 15569124 (-) True G105326
TU131866 lncRNA upstream 635859 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 647037 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 742707 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 839736 16236128 ~ 16237685 (-) True G105473
AMCG00011244 mRNA downstream 26842 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 44768 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 96227 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011237 mRNA downstream 119104 15247192 ~ 15272628 (-) True AMCG00011237
AMCG00011238 mRNA downstream 153007 15235625 ~ 15238725 (-) True AMCG00011238
AMCG00011248 mRNA upstream 46798 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011251 mRNA upstream 104609 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011261 mRNA upstream 406081 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 566973 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 578639 15975031 ~ 15977007 (-) True AMCG00011260
TU131692 other downstream 18553 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1323171 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1395143 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1712470 13676131 ~ 13679262 (-) True G104929
TU131202 other downstream 2024658 13365083 ~ 13367074 (-) True G104909
TU131737 other upstream 103142 15499534 ~ 15502133 (-) True AMCG00011251
TU131862 other upstream 566946 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 567060 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1561789 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2333559 17729951 ~ 17733068 (-) False AMCG00011313

Expression Profile