RNA id: TU131742


Basic Information

Item Value
RNA id TU131742
length 1905
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G105326
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15535370 ~ 15569124 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tgtttttaagaaaggAAACATGATAACACCTTTTATtcacactttacaaaaaaagaaaagaaaaaaaaataagtctaCTACAATACTATCAGCATTTCAAATGTACTCATCTTTAACTGGACATTTGCCATTTGCTTaaacagaaagggaaaaagaCGGACAGAGAAAGAGCAGGTCACAGACAAGGCCCAGACAAGGACCACAGATccaatgtttttgtaaaaattgttaaaatccaaagtttttcacatttgcttttttaaagattaagaTTAATTTTAAGGTGTAGCTGCACTTTCAATCTACATTAAGTGCttgtcaattgttttatttttgtcgtcaactttaagaaataaaatcttTAGTGCAGTGTACCacaactgcaaattacaaatttaatGTCAAATGGTGACTTACAGAACCGCCATACCCTGTATGGTTCCCTGCCAGCAGATGAAACGCAACAAGCTAGACCGGGTTATACTTCTGGCTCGTGTGACATACTAGATAGATTAAACTTAGTACGAAAAAACTcccctttttttaaaaacagctcTAACAAAAagtataacaataattaaaggtAGATCTTTACACTTGGCTTTATGGTAATATGCAACAGATGGCACTATACACAAATAGGTTAAGCTATAGCACAGGTCTAGCTCTACAGAACAGCATGGTTCGGTCCcaatttcattataaaaaatagttttgcaaTGGCCTGGGGTTTTCTGTGTCTGACATTTTGCtctttattctgtttaaaaacGAAGTTAAAAATAGGATGCTTCTTAAACACCAGACCAAAAGTTTCTGAAGGTATCACATGATAGCATACCTTggtgtaaaaatacaaaaaaaaaaaaaaaaaattatatatataaaaaaaatcaagaacaaaacaaaaaaaaaaaacagaagatccAAGCACTGTGCAAAGAGACAAACAGTTCTAAGGTTCAGCAGCtataaaatttacattttccataCTTAACCTGATCACTATGGAATTCATTACTCCATGAgaagaaaggaacaaaaaaaaaaaaaagtcacagctaataccccaaaaaaaagaaggaatcataaaatctttacaaatgttaacagtatttaaaaaattgaaaagacaTTGTACAGGTTTCCCCAGCTTGCACGGGCAGTGCTGTTTGAGAACAGAACTAGTGAGGCACACGTCTTTTGAAATGGGGGAATTCTTACATTTTCCTACCCATTGTGCACTGCCAATCAGTTGCAAAGAAATTAAGAGCTTTCCATTTCCCCTTCGGTTCAACAGACCTGCCCTCAAAGGGTTCAAAATGTCACATTAGATTAGCAGAGAAAACCTgtcaatgtctttttttcttctttttacaaGCTggtcttatatatttttttaataacattaacatgtGCAACGGATAAAAATTTAGCCTTAGTTAACAATacaatcattttttccaaatcagttttttttttttttttttttttaagtacaaaaATGCCATAAATCAGGTCTTTTGTGGTTCATATACAATCATTTAAAGGCTAAATTCAATTTCTATTATACAAACACTTCTCTGAAAAAAACCTTGGAGTGAAGTATGGAAAAATGGCCTTAGAACGTTACTACTGGCCTCAGACAGTGCTACAGATCCCTGTGAACGCAAATGCCTAGACAAGTGTACGAGTGAGCAGACATGCCATGCAGGTGAGCATCAAAACAGTTGCTTTCTTTCAATCTGTTAAAAATATGCTATTGGGTCATTTATTATTGCCTCAGTTTTATTGGATATACCTAGTTTTTAACTGAAATCTTAAATATCTTAAAGTGGTTTTCGTCCTGTATGCTAGTAGTTCTTTGTGTTTGGGTGCAGGTGGTTTGGAGGGGTTGCTGTAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131679 lncRNA downstream 131137 15385716 ~ 15404233 (-) True G105282
TU131703 lncRNA downstream 138978 15391732 ~ 15396392 (-) True G105298
TU131695 lncRNA downstream 160607 15373347 ~ 15374763 (-) True G105291
TU131651 lncRNA downstream 212658 15298645 ~ 15322712 (-) True G105261
TU131635 lncRNA downstream 234519 15233703 ~ 15300851 (-) True G105249
TU131866 lncRNA upstream 463127 16032251 ~ 16035023 (-) True G105427
TU131884 lncRNA upstream 474305 16043429 ~ 16048522 (-) False AMCG00011271
TU131897 lncRNA upstream 569975 16139099 ~ 16141338 (-) True G105454
TU131922 lncRNA upstream 667004 16236128 ~ 16237685 (-) True G105473
TU131928 lncRNA upstream 675572 16244696 ~ 16247301 (-) True G105479
AMCG00011251 mRNA downstream 19695 15501001 ~ 15515675 (-) False AMCG00011251
AMCG00011248 mRNA downstream 91245 15443190 ~ 15444125 (-) True AMCG00011248
AMCG00011244 mRNA downstream 170480 15361316 ~ 15364890 (-) True AMCG00011244
AMCG00011246 mRNA downstream 188406 15328336 ~ 15346964 (-) True AMCG00011246
AMCG00011245 mRNA downstream 239865 15282577 ~ 15295505 (-) True AMCG00011245
AMCG00011261 mRNA upstream 233349 15802473 ~ 15937457 (-) True AMCG00011261
AMCG00011259 mRNA upstream 394241 15963365 ~ 15973845 (-) True AMCG00011259
AMCG00011260 mRNA upstream 405907 15975031 ~ 15977007 (-) True AMCG00011260
AMCG00011263 mRNA upstream 409573 15978697 ~ 15985898 (-) True AMCG00011263
AMCG00011265 mRNA upstream 417954 15987078 ~ 16000017 (-) True AMCG00011265
TU131737 other downstream 33237 15499534 ~ 15502133 (-) True AMCG00011251
TU131692 other downstream 162191 15370402 ~ 15373179 (-) True G105290
TU131409 other downstream 1466809 14067215 ~ 14068561 (-) True G105050
TU131382 other downstream 1538781 13996200 ~ 13996589 (-) True AMCG00011211
TU131247 other downstream 1856108 13676131 ~ 13679262 (-) True G104929
TU131862 other upstream 394214 15963338 ~ 15973872 (-) False AMCG00011259
TU131861 other upstream 394328 15963452 ~ 15973872 (-) False AMCG00011259
TU132119 other upstream 1389057 16958181 ~ 16961069 (-) False AMCG00011290
TU132307 other upstream 2160827 17729951 ~ 17733068 (-) False AMCG00011313
TU132311 other upstream 2182129 17751253 ~ 17751502 (-) True G105770

Expression Profile